Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02173 ATGGAAACTCACTTTAATCACAATTTATTCGACAGGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTTAAATGGATCAAAGAATGGGTCACCCAAGATGTTGTTGCAACTGGAGGAAAGTGTTTTCTTTTGAAATGGGTTACAGAGGATACATTAAAGGCATTAAAGGAGAAAGCAAAACAGTCAGAGGCACCAGAGCCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGATGGCTGTGGAAAAACATTTATTGATGCTGGTGCTTTGAGGAAACATTCTCATATTCATGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCCCATATGAAAACGCATTCACAAGAGAACTATCATATCTGTCCGTACGCTGATTGTGGAAAGAGATTTGCCCATGAGTACAAATTGAAGAACCACATTACGTCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTTAAATATACACCACCTTCCGAGAAGCAAACTAAGGTTTCTAAACCTTCCGGAGGAGCTTACGCTTCTGCATCATCTGATCGTCCATATGCTTGCCCCTACGAAGGGTGCGAAAAGGCTTACATCCATGAATACAAGCTTAAACTTCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCGCAACATAATGGGGAAAACGAGGTAGAAGCCAGTGATCAAGATGTCTATGGTGGAAAACGGGCAAATGTAAAAAACCAGAAACAGAACAAACCTAAACCAAACTTGAAGTTACCGCCATCAAAAATATCACAACGGAAAGGCACAACTCCATCTCCTGCTCCAATGAGTGTAGTTAAAAAATCATGGCCAGTAAAAGAAGAAAACTATGAAGAAGAAGATAGCGAAGAAACGGAGGAGGAGGACCGCGATAACGTGGAGGAGGGATGGAGATATGCTGAAAACGAAGAAGATGATGAGGAAACAGAATATGAAGATTAA 1113 41.42 METHFNHNLFDRRPIVKNKSPPVKWIKEWVTQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAQHNGENEVEASDQDVYGGKRANVKNQKQNKPKPNLKLPPSKISQRKGTTPSPAPMSVVKKSWPVKEENYEEEDSEETEEEDRDNVEEGWRYAENEEDDEETEYED* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24714554 24718504 + CsaV3_5G029920.1 Csa05g02173 530560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02173 370 MobiDBLite consensus disorder prediction 306 320 - -
Csa05g02173 370 MobiDBLite consensus disorder prediction 201 227 - -
Csa05g02173 370 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Csa05g02173 370 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Csa05g02173 370 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Csa05g02173 370 Gene3D Classic Zinc Finger 77 102 - -
Csa05g02173 370 Gene3D Classic Zinc Finger 134 161 - -
Csa05g02173 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Csa05g02173 370 MobiDBLite consensus disorder prediction 333 348 - -
Csa05g02173 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Csa05g02173 370 PANTHER BNAA03G13270D PROTEIN 4 369 - -
Csa05g02173 370 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Csa05g02173 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Csa05g02173 370 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Csa05g02173 370 Gene3D Classic Zinc Finger 103 133 - -
Csa05g02173 370 MobiDBLite consensus disorder prediction 206 220 - -
Csa05g02173 370 MobiDBLite consensus disorder prediction 355 370 - -
Csa05g02173 370 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Csa05g02173 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Csa05g02173 370 SMART c2h2final6 136 160 IPR013087 -
Csa05g02173 370 SMART c2h2final6 166 190 IPR013087 -
Csa05g02173 370 SMART c2h2final6 229 254 IPR013087 -
Csa05g02173 370 SMART c2h2final6 77 101 IPR013087 -
Csa05g02173 370 SMART c2h2final6 106 130 IPR013087 -
Csa05g02173 370 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 369 - -
Csa05g02173 370 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Csa05g02173 370 MobiDBLite consensus disorder prediction 257 370 - -
Csa05g02173 370 Gene3D Classic Zinc Finger 162 191 - -
Csa05g02173 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Csa05g02173 370 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Csa05g02173 370 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Csa05g02173 370 Gene3D Classic Zinc Finger 202 272 - -
Csa05g02173 370 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Csa05g02173 370 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02173 Csa-Chr5:24714554 Csa05g02865 Csa-Chr5:28985563 7.69E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31805 PF00096 zf-C2H2 0.0045 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02173 - - csv:101218905 682.945