Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02201 ATGCCAATCTCACCCTCAAGAACTCTACAAGTTTCTCATTCACAAAGCATGATACAACCTTTCTCAACTCTTCTTTTAAGTAGAGGGAAGTTGACGCCTGCAGAAAACTACTATTCTGCCATGGCTACTTGCAACCAAGATTCGGTACAAGACGAGGAACACATTTTCTGCAGCCAACTTCCTGAGGTCCAAGTGCCTTATGATATCACACTGCCTGAGTTTGTACTCCAGAATGCTGAATCATATGCCGAGAATGTGGCATTTGTGGAAGCCATGAGCGGAAAGGCATACACTTACCGTGAAGTTTTAAGAGACACAAATAGATTTTCCAAGGCCTTGCGCTCTCTGAGGTTGAAGAAAGGACATGTGGTTATTGTTGTTCTACCTAATGTTGCTGAATACGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCAGGTGTGAATCCGGCAGCTCACATATCAGAAATCAAAAAGCAAGTGGAGGTAGCAGAAGCAAAACTTGTCGTCACAAATGCCGCAAACTTCGAAAAGGTGAGGGAATTAAAGCTACCAGTCATCTTATTAGAGGAAGAACTAATGGAAGGTGCCATGAATTGGCACAAACTTCTTGAAGCAGCAGATCGTGCAGGGAACAATTTTGTTAAAGAGGAGATTAAGCAAACTGATTTATGTGCACTTCCTTTCTCATCAGGAACCACAGGAGTTTCCAAAGGTGTTATGTTAACTCACCGAAATCTCGTAGCTAATATGTGTTCGACTCTCTCTGGTGTCCCGCAAGAAATGGAGGGCAAGGTTACGACGCTAGGCCTCATTCCATTCTTCCATATTTATGGGATCACTGGAATATGTTGCTCTACACTTAGAAACAAAGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACTTTCATTAATGCTCTCATAACACATGAGATCACATTTGCTCCAATTGTTCCTCCTATTATACTGGCTTTGGTTAAGAATCCCATTGTGGAAGAATTTGATCTTAGCAGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAACTTCAAACTGCCTTCGAGAGAAAGTTCCCCGGTGTGGACGTTCAAGAGGCATACGGACTTACTGAGCACTGTTGCATCACTCTTAACTATGGAAGTATAGGGAAAGAGAATCTCAGTGCAAAGAAAAACACAGTTGGCCGTATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCAGACACTGGAAGGTCTCTGCCGAAGAACACTCCAGGTGAAATCTGTGTAAGAAGCCAATGTGTGATGCAAGGCTACTACAAAAACGAAGAGGAGACTTCAAGGACGATCGATACCAAAGGCTGGATGCACACTGGGGATATTGGATACATCGATGACGATGGCAACGTGTTTATTGTGGATCGTATCAAGGAATTGATCAAGTACAAAGGATTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTTCTAACTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGTTGCCAGATGAAGAAGCCGGTGAGATCCCAGCAGCAAGCGTTGTGATGGCTCCGAACTCAAAAGAAACCGAAGAAGATATAATCAAACACGTTGCCTCAAATGTTGCACATTACAAGAAAGTTAGACTCGTTCATTTTGTAGACACTATCCCAAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCTGATGAATCCGCTAGATTTATCTTCTAA 1785 43.36 MPISPSRTLQVSHSQSMIQPFSTLLLSRGKLTPAENYYSAMATCNQDSVQDEEHIFCSQLPEVQVPYDITLPEFVLQNAESYAENVAFVEAMSGKAYTYREVLRDTNRFSKALRSLRLKKGHVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVAEAKLVVTNAANFEKVRELKLPVILLEEELMEGAMNWHKLLEAADRAGNNFVKEEIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANMCSTLSGVPQEMEGKVTTLGLIPFFHIYGITGICCSTLRNKGKVVVMGRFDLRTFINALITHEITFAPIVPPIILALVKNPIVEEFDLSSLKLQAIMTAAAPLAPELQTAFERKFPGVDVQEAYGLTEHCCITLNYGSIGKENLSAKKNTVGRILPNLEVKFIDPDTGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDTKGWMHTGDIGYIDDDGNVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEEDIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMIEKIRADESARFIF* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24830798 24833762 + CsaV3_5G030200.1 Csa05g02201 530588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02201 594 CDD 4CL 65 574 - -
Csa05g02201 594 Pfam AMP-binding enzyme 77 486 IPR000873 -
Csa05g02201 594 Pfam AMP-binding enzyme C-terminal domain 495 570 IPR025110 -
Csa05g02201 594 Gene3D - 53 481 IPR042099 -
Csa05g02201 594 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Csa05g02201 594 SUPERFAMILY Acetyl-CoA synthetase-like 51 583 - -
Csa05g02201 594 Gene3D - 482 584 IPR045851 -
Csa05g02201 594 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 47 583 - -
Csa05g02201 594 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 47 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02201 Csa-Chr5:24830798 Csa07g02073 Csa-Chr7:20023534 2.53E-135 dispersed
Csa05g02201 Csa-Chr5:24830798 Csa02g00587 Csa-Chr2:4235452 3.19E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02201 K01904 - csv:101220731 1170.99