Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02208 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCTGCCGTGGCAATTTCTTCCTCAAGTTCATCGAAGAATGGCTGCCCCAAGCTGGCTTCTAATTTCCTTACTGGCAAGAAGCTTAGGCTCAGAAACTTAAATGCTGCTGCTACTGCTGTCGTTGCTCCTCGAACGGTTCCGGTATGCGCAGCAGCCGATCCGGATAGACCTCTTTGGTTCCCTGGCAGCACTCCTCCTCCGTGGCTCGATGGCAGCCTTCCCGGTGACTTTGGCTTTGACCCTCTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAACAGGCGGAGCTCGTACACTGCCGATGGGCAATGTTGGGGGCAGCTGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGTATATTGAACACTCCTTCGTGGTACACTGCCGGTGAATTGGAATATTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATCGGTTGGGCTGAGGGTAGACGGTGGGCCGATATCCTCAAACCCGGATGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTTGGGTACCCTGGTGGGCTCTGGTTTGACCCACTCGGATGGGGCAGCGGATCACCGGAAAAGATTAAGGAATTGAGAACGAAAGAGATTAAGAACGGACGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGATAACCTTTTTGCTCACCTTGCTGATCCTGGCCACGCCACCGTCTTCGCCGCATTCACACCAAAGTGA 816 53.19 MASACASSAIAAVAISSSSSSKNGCPKLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24869407 24871125 - CsaV3_5G030270.1 Csa05g02208 530595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02208 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
Csa05g02208 271 SUPERFAMILY Chlorophyll a-b binding protein 62 269 - -
Csa05g02208 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Csa05g02208 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 271 IPR001344 GO:0009765|GO:0016020
Csa05g02208 271 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00241 Csa-Chr1:1525225 Csa05g02208 Csa-Chr5:24869407 2.78E-75 dispersed
Csa01g03007 Csa-Chr1:26223514 Csa05g02208 Csa-Chr5:24869407 2.23E-102 dispersed
Csa02g01960 Csa-Chr2:18395695 Csa05g02208 Csa-Chr5:24869407 1.74E-63 dispersed
Csa05g01755 Csa-Chr5:20901153 Csa05g02208 Csa-Chr5:24869407 2.87E-35 dispersed
Csa05g02208 Csa-Chr5:24869407 Csa03g02852 Csa-Chr3:27304318 3.06E-39 dispersed
Csa05g02208 Csa-Chr5:24869407 Csa01g00560 Csa-Chr1:3626647 4.64E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02208 K08908 - csv:101214055 514.998