Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02212 ATGAAGCTCCTTGTTCTAGCCACCCTCACCATCTCACTGCTCTTCCCTTTCAGCCTCCTCAATTTCCTCTTCTGCTCTCTCCTCGCCTTCTCTCTCAACTACTGGCTCATCCCCGGTGGATTTGCGTGGCGTAATCACCACCGCTTCTCTGTCAACCTCCCTGGACCCTCTGGTTGGCCACTCCTTGGCACGCTTCCACAAATGGGGCCACTTGCTCACCGGAATCTTGCTACCATTGCTCACTCCTTCAAAGCCACACGCCTCATGTCCTTTAGCATGGGCGCTACTCGGGCCATCATAAGTAGCCACCCTGACACGGCCAAACAGATTCTCTGTGGGTCAGCTTTCTCCGACCGACCGGTCAAGCAATCGGCTAGGCTCATGATGTTCGAGAGAGCCATTGGCTTTGCTCCAAATGGGGCTTATTGGCGCAATCTTCGACGAATTGCAGCCAACCACATGTTTTCCCCACGGAAAATCTCCGACCTGGAGGGGCTCCGTAGGGAGGTGGCGGATGAAATGGTGGCAGAGCTGTCGGGAAATATGGCAAGTGAGGGGGTGGTGAGGCTGAGAGAAGTGCTGCAGAAGCATTCTTTGAAGAACATAATAGAGAGTGTGTTCGGGAGTGGTATGGGGATGGGAAGGAAGGGAGAGCTGAGTGATATGGTGAGAGAAGGGTATGAATTGATAGCGATGTTCAATTGGGAAGATTATTTTCCGGTCAGCTTTTTGGATTTTAGTGGAGTGAAACGAAGGTGCAATGAATTGGCGGGCAGGGTTAATGTGGTAATTGGACAGATCGTTGAAGAGAGAAAAAGAGAAAATACTGAGTTTCATAATGATTTTCTTACTACTTTGCTAACTTTGCCAAAGGAGGATCAGTTGAGTGATTCAGATATGGTGGCTGTTTTATGGGAAATGATATTTCGTGGAACCGACACTATAGCAATACTCCTAGAATGGATAATGGCGAGAATGATATTACACCCAGATATCCAAGCCAAAGCTCAGAACGAGATTGACACGTGCGTCGGGTGCAATAGGCACGTGTGTGATTCCGACATACCGAACCTTCCCTACCTCCAAGCAATAGTGAAAGAGGTTCTTCGTCTACATCCTCCGGGGCCATTACTCTCGTGGGCCCGGTTGGCAATCCACGATGTCCATGTGGACAAGATCTTGATCCCAGCTGGCACAACGGCGATGGTGAACATGTGGGCCATAGCCCACGACCCGTCGATATGGAAAGACCCATGGACATTTAAGCCAGAACGGTTCATTGAAAATGACATGTCGATCATGGGTTCGGACTTGAGGTTGGCGCCATTTGGGGCTGGGCGAAGGGCGTGTCCAGGTAGGGCTTTGGGTTTAGCCACTGTGCACCTATGGCTAGCCAATTTTCTGCACCGATTTAGATGGACTCCATGTTCATCCACTAAGTCGGTTAATTTGTCAGAGTGTTTGAAGTTATCACTTGAAATGAAGAAGCCTTTGAAATGTTGTGTGGTTGGTCGATGA 1518 49.6 MKLLVLATLTISLLFPFSLLNFLFCSLLAFSLNYWLIPGGFAWRNHHRFSVNLPGPSGWPLLGTLPQMGPLAHRNLATIAHSFKATRLMSFSMGATRAIISSHPDTAKQILCGSAFSDRPVKQSARLMMFERAIGFAPNGAYWRNLRRIAANHMFSPRKISDLEGLRREVADEMVAELSGNMASEGVVRLREVLQKHSLKNIIESVFGSGMGMGRKGELSDMVREGYELIAMFNWEDYFPVSFLDFSGVKRRCNELAGRVNVVIGQIVEERKRENTEFHNDFLTTLLTLPKEDQLSDSDMVAVLWEMIFRGTDTIAILLEWIMARMILHPDIQAKAQNEIDTCVGCNRHVCDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKILIPAGTTAMVNMWAIAHDPSIWKDPWTFKPERFIENDMSIMGSDLRLAPFGAGRRACPGRALGLATVHLWLANFLHRFRWTPCSSTKSVNLSECLKLSLEMKKPLKCCVVGR* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24906086 24909220 - CsaV3_5G030310.1 Csa05g02212 530599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02212 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Csa05g02212 505 Pfam Cytochrome P450 54 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 Gene3D Cytochrome P450 43 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PANTHER CYTOCHROME P450 78A7-RELATED 6 505 - -
Csa05g02212 505 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02212 505 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 6 505 - -
Csa05g02212 505 SUPERFAMILY Cytochrome P450 54 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00614 Csa-Chr1:3922185 Csa05g02212 Csa-Chr5:24906086 0 dispersed
Csa05g02212 Csa-Chr5:24906086 Csa06g00898 Csa-Chr6:7236157 6.46E-173 dispersed
Csa05g02212 Csa-Chr5:24906086 Csa06g02088 Csa-Chr6:18629600 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02212 - - csv:101212611 1007.28