Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02220 ATGGTGATGGTGATGGTGGAGAAGAGTCTGCTGTTTCTTCTTTTGTTTTTTAACTTTCACTTCACTTTTAGGGTTTTAGCCCTCTCACCGGATGGTCTCTCGCTTCTTTCTCTTAAGTCAGCCGTCGACCAGTCGCCGGATTCCTCTGTTTTCTCCGATTGGAACGAGAATGACTCTACGCCATGCCAATGGTCTGGCATTTCTTGCATGAATGTTTCTGGTGACTCGCGAGTCGTTGGAATTGCTCTTTCTGGTAAGAATCTTCGTGGCTACATTCCTTCTGAACTTGGTTCGCTTGTGTATCTACGCCGATTGAACCTTCATAACAACAATCTCTACGGTTCTATACCTGAACAGCTGTTTAATGCTACCTCATTGCATAGCCTGTTTCTCTACAGTAATAATCTCTCCGGTCCTTTCCCTCCATCGATCTGCAATATTCCGAGGCTTCAAAACCTCGATCTCTCCAACAATTCCCTTGCTGGACCAGTCCCCGACGAGTTGAGAAATTGTAAGCAATTGCAGCGATTAATACTCGCTAGAAACCAATTCGATGGAGAAATTCCGTCTGGTGTTTGGTCTGGGATGGATAATTTAGTTCAACTCGATCTCTCTTCCAATGATTTCAGTGGATCGATTCCGGAGGATCTAGGGGAACTGAAGACACTCTCCGGTACGCTCAATCTCTCCTTCAATCATTTATCGGGTAAAATCCCGAAAACTCTAGGAGATTTGCCGGTGACGGTGAGTTTCGACCTACGGAGCAACAACTTAAGCGGAAGTATACCTCAAACGGGTTCGTTTGCGAATCAGGGACCGACTGCATTTCTCAACAATCCCGAGCTATGCGGATTTCCTCTTCAGAAATCTTGTGAGAATTCGGAACGTGGCTCACCGGGAAATCCCGATTCTAAACCATCTTACATTACCCCTAGAAAAGGATTGAGCGCCGGATTAATTATTCTCATCTCCGCAGCCGACGCCGCCGGAGTAGCGTTCATCGGCCTGGTAATAGTTTACGTATACTGGCGACGGAAGGACAGTTCAAACGGCTGTAGCTGTACGTCGAAGAGAAAATTCGGCGGGAATCAGAAAGACGGTCTCTGTAATTTTCCTTGTATGAATGGGAATGATAAGAACGAGGAATCTGAAATGGAGGAACCAGAGAACAGTGACAGAAGCAGAGAGGAAGGAGGGCTTGTAGCCGTAGACAAAGGATTTACGTTCGAGCTCGATGAGCTGTTGAGAGCGTCAGCGTATGTGCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTACTCGGAAATGGGATTCCGGTGGCTGTACGGCGGTTGGGAGAAGGGGGAGAACAGAGGTATAAGGAGTTCGCGGCGGAGGTACAGGCCATTGGAAGGGTAAAACATCCGAATATCGTGAAATTGAGAGCTTACTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGACTTTATCTCCAATGGAAACTTGGCCTCTGCTCTTCGCGGAAAAAACGGGCAGCCATCTTCAAGCCTTTCATGGTCAACAAGACTACGAATAACCAAAGGAACCGCACGAGGATTAGCCTATCTCCATGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAACCCTCCAACATCCTCCTCGACAACGATTTCCATCCCCACATCTCTGACTTCGGCCTCAACCGTTTAATCAGCATCACCGGCAACAACCCCTCCTCCTCCGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAATCCGTCCAAACCGACCGCACCAACAACTACTGTGCGCCGGAGGCCCGAGCCCCCGGCGGCCGCCCCACCCAAAAATGGGACGTATATTCCTTCGGCGTCATGGTCCTCGAATTACTCACCGGAAAGTCCCCGGAGCTTTCGCCGAACACGTCGACTTCTTTGGAAATTCCAGATTTGGTGAGATGGGTTAGGAAAGGATTTGAAGAAGCAAAGCCATTATCGGATTTGGTTGATCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTGCTCGCCGTATTCCACGTTGCGCTCGCTTGTACAGAGAGCGATCCGGAGGTTCGGCCCAGAATGAAGACAGTGTCGGAGAGTTTTGATAGGATTGGATCGTGA 2145 48.9 MVMVMVEKSLLFLLLFFNFHFTFRVLALSPDGLSLLSLKSAVDQSPDSSVFSDWNENDSTPCQWSGISCMNVSGDSRVVGIALSGKNLRGYIPSELGSLVYLRRLNLHNNNLYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPVPDELRNCKQLQRLILARNQFDGEIPSGVWSGMDNLVQLDLSSNDFSGSIPEDLGELKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPELCGFPLQKSCENSERGSPGNPDSKPSYITPRKGLSAGLIILISAADAAGVAFIGLVIVYVYWRRKDSSNGCSCTSKRKFGGNQKDGLCNFPCMNGNDKNEESEMEEPENSDRSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQPSSSLSWSTRLRITKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIGS* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24983100 24987555 - CsaV3_5G030390.1 Csa05g02220 530607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02220 714 ProSiteProfiles Protein kinase domain profile. 416 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02220 714 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 713 - -
Csa05g02220 714 Pfam Protein kinase domain 421 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02220 714 Gene3D Transferase(Phosphotransferase) domain 1 492 714 - -
Csa05g02220 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 713 - -
Csa05g02220 714 SUPERFAMILY Protein kinase-like (PK-like) 421 706 IPR011009 -
Csa05g02220 714 SMART serkin_6 420 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02220 714 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Csa05g02220 714 Gene3D Ribonuclease Inhibitor 192 293 IPR032675 -
Csa05g02220 714 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Csa05g02220 714 CDD STKc_IRAK 422 712 - -
Csa05g02220 714 SMART LRR_typ_2 99 123 IPR003591 -
Csa05g02220 714 SMART LRR_typ_2 196 220 IPR003591 -
Csa05g02220 714 SMART LRR_typ_2 172 195 IPR003591 -
Csa05g02220 714 SMART LRR_typ_2 147 171 IPR003591 -
Csa05g02220 714 SUPERFAMILY L domain-like 33 288 - -
Csa05g02220 714 Gene3D Phosphorylase Kinase; domain 1 408 491 - -
Csa05g02220 714 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Csa05g02220 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01050 Csa-Chr4:8380657 Csa05g02220 Csa-Chr5:24983100 5.06E-169 dispersed
Csa05g02220 Csa-Chr5:24983100 Csa05g02641 Csa-Chr5:27467713 0 dispersed
Csa05g02220 Csa-Chr5:24983100 Csa05g02059 Csa-Chr5:23897339 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78266 PF00069 Pkinase 1.30E-32 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02220 - - csv:101220493 1410.97