Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02223 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTACATGGAGAAATGTACAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCAGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAACACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCAATAACTGGAGATGCTGTTCAAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAGTTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGTCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGGCTCATAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCGATTGTAGCTTACCTTTTGCATCTAATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGACAGATGACAATGACTCACAGAGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGATAATGGAATTGCAGCAAATGGTCAAGTCTTTGAACAGCAGCTTTCAAAGCTTAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTACCACCTGAGGAGTTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGCGATGGTCATAAAACCTGCCCGAAGACTCAACAGAGACTCTCCCACCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAGTTGGTGTGAACATAACGGAGTTCCAATCTTGGATGGCCCCCCAAAGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAAAATCACGATCTGCGGATAATGTTGGCTCTAACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGATGCTGAAGGAAATGAAGCAGATGATCATACGTACATGGAGGAGACATCAGATTTTATTACAATTGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGCAGAAGGAGATTTGAGAAAGAAATGTAAGGTTGTGGAGCAAATAAGACTTTCATTGAAGGATGACGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGACTTCCTAACTTTAGCTCTTATTGAAGAAAATAGTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGCGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCTCTATATCTGAATCTTTCCTGCCTAGAAGATGCTAAACCAATCATTAGTTCGAGTACAGCGGTTCCTTTCCTGATCCAGCTGCTTACTAGTAATGACGAATCCCAAACTAAGCTCGATGCACTTCATACCCTTTATAACCTTTCAACCACACCTTCCATCATTCCTATTCTTCTTTCCACTGGTATTGTTGGCGGACTTCAATCTTTCCTCACATCGCCCAGTGACAGCATATGGACAGAGACTTCCTTAGCTATCTTAATGAACTTAGCTTCAAGCAAGTTAGGGATAGAAGAAATAACTTCAGCCCCGGAGCTTATAAGTGGATTAGCAGCCATTGTTGATGCTGGGGAACGTGCTGAACGGGAGCAAGCGGTATCATGCTTGTTGGTTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGAGTTATTCCAGGATTGGTTGCGATTACGGTAAACGGGACTTCGAGAGGGAAAGTAAAAGCGCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCACTCAACAGCGAGATGGAAATAGTGACACAGCCATGGCTGCTCCAGATCCTAAGCCACTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2304 41.71 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVQAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLIERARLEEDKRKESIVAYLLHLMRKYSKLFRSELTDDNDSQSGSTPCSPTVRCSLEDNGIAANGQVFEQQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIASWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRSADNVGSNTLKEVKVVPLEESGTIKDAEGNEADDHTYMEETSDFITIESCVNFMAVLTAEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMDFLTLALIEENSDAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTSNDESQTKLDALHTLYNLSTTPSIIPILLSTGIVGGLQSFLTSPSDSIWTETSLAILMNLASSKLGIEEITSAPELISGLAAIVDAGERAEREQAVSCLLVLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDITQQRDGNSDTAMAAPDPKPLCKSVSKKKMGKALSFFAKSKRFSLYQC* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25008453 25014186 + CsaV3_5G030420.1 Csa05g02223 530610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02223 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Csa05g02223 767 Gene3D - 406 724 IPR011989 -
Csa05g02223 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Csa05g02223 767 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 726 - -
Csa05g02223 767 PANTHER U BOX DOMAIN-CONTAINING 1 726 - -
Csa05g02223 767 Coils Coil 175 195 - -
Csa05g02223 767 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Csa05g02223 767 SUPERFAMILY ARM repeat 440 695 IPR016024 -
Csa05g02223 767 CDD RING-Ubox_PUB 284 326 IPR045210 -
Csa05g02223 767 MobiDBLite consensus disorder prediction 717 738 - -
Csa05g02223 767 SUPERFAMILY RING/U-box 274 355 - -
Csa05g02223 767 SMART arm_5 506 544 IPR000225 GO:0005515
Csa05g02223 767 SMART arm_5 545 586 IPR000225 GO:0005515
Csa05g02223 767 SMART arm_5 460 504 IPR000225 GO:0005515
Csa05g02223 767 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00565 Csa-Chr4:3743008 Csa05g02223 Csa-Chr5:25008453 4.45E-69 dispersed
Csa05g02223 Csa-Chr5:25008453 Csa01g02400 Csa-Chr1:21307088 2.61E-49 dispersed
Csa02g01820 Csa-Chr2:17465490 Csa05g02223 Csa-Chr5:25008453 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02223 - - csv:101210079 1497.64