Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02244 ATGGGGTTTCCTCTTTTTTGGGGTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCCATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTACACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGAGACTTTCCAATCGACGACAAGAAGTACTGTTACACTTTGAAAACAGAGGAAAGAAGAAGATATTTGGTTCGAGCAACTTTTCAATATGGGAGTTTGAAAGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCTACTGTTACTATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATCATCAGGGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGACTTTGAAGATAATTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCGTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGAACAGAAAGAATTAGCACATTGAATAATATTAATGTAATGACTAGAGAATATCCACCTGTTAAAGTGATGCAAACTGCAGTTCTTGGCACTAAAGGAGTGCTCAGCTACAGATTGAATTTGGATGATTTTCCTGCCAATGCTAGGGCTTATGCATATTTTGCTGAGATCGAAGATTTGGGTTGGAACGAGACTCGGAAGTTCAAACTAGAGGAACCTAACATTCCGGATTCGAGCAATGCAGTGGTGAATATTGCAGAGAATGCCAATGGGACATATACTCTTTACGAACCAAGTTATATGAATGTGACTCTGAGTTTTGTGCTTTCGTTCTCGTTTGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTAAATGCATTGGAAATTAGCAGATATGTTGAAATTGCTCCCAAGACTGATGGGCGAGATGAGGCTGTTGCGAATATCTTCCGTAACGTGTCAGCAGAGAATGTCTGGACAAATATAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCAAGAATAACTAAAATAGAGCTTTCCAGAAAGAATCTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTGGTGGAATTGTGGTTGGATGGAAATTCTCTTGCAGGGCCACTTCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTTGAGAATAACAAATTAACAGGGACATTGCCTTCTTACCTGTGTAGTTTGCCCAACTTGCAGGAACTATATATCCAAAACAATACATTTTCTGGTGAAATACCCTCAGAATTATTGGCCAAGAAACTCATCTTTAAGTATGATGGTAACGTGGGGCTGCACAAAACTGAACGATACAAGGTGCATTCTAAGCTTATATTAGGAGTTTCATTGGGGGTGCTTGTGCTTCTGGTTATTCTACTTTTAGGAAGTTTGCTGTTACTTCGCAAGCTTCGAAGAAAAACAGCACCTTACCAGAAAAAAGGTGGTTCTCTGAATATCAGCACGAAACGCTCTTCTGCATACTCGATCGGCAAGGGGGACGAAGGCATGGCCTATTATTTATCCCTCTCCGAGCTGGAAGAAGCGACAAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGGTCAGTCTTTTATGGGAAAATGATTGATGGCAAAGAAGTTGCCGTCAAGATCATGGCCGAGTCATCTACACATGGGAATCAACAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGATACTGTGAAGAAGAACATCAACGGATACTGGTATATGAATACATGCATAATGGGACATTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGACTGGCTGGCTCGCTTGCACATAGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACAGGATGCAGCCCGAGTATCATCCATCGAGATGTAAAAACTAGCAACATACTCCTGGACATCAATATGAGGGCAAAAGTTTCTGACTTTGGCCTCTCAAGGCAAGCTGAGGAGGATTTGACCCATGTTTCAAGCGTTGCTCGAGGAACCGTAGGCTATTTGGATCCTGAGTATTATGCTTGTCAACAACTCACCGAAAAGAGCGACGTATATAGTTTTGGGGTTGTGCTGCTCGAACTGATCTCTGGGAAGAAACCTGTCTCACCAGAAGACTATGGGAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGACGTGACGAGCATCGTAGATCCATTTTTAGAAGGAAAAGTGAAAATAGAATCGGTGTGGAGAATCGCCGAAGTTGCCATACAGTGTGTGCAACAGCATGGAGTTTCCAGGCCAAGGATGCAAGAAGTCATCTTAGCCATACAAGATGCAATCAAGATTGAACATGGTACTGAAGGGAACCAAAAGCTATCTTCAGAGAATTTAAAAGCACAATCATCTCGAAAAACTTTGCTGACGACCTTTCTTGAAATCGAGAGCCCCGACGGTTCCCTCCTTCCTTCTGCAAGATAA 2769 42.47 MGFPLFWGLILLLVVSSVHCQVKEFISIDCGGTKNYTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAPKTDGRDEAVANIFRNVSAENVWTNIGDPCVPTSWEWVTCSATQPPRITKIELSRKNLKGEIPPEINTMDGLVELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLCSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKTERYKVHSKLILGVSLGVLVLLVILLLGSLLLLRKLRRKTAPYQKKGGSLNISTKRSSAYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEHGTEGNQKLSSENLKAQSSRKTLLTTFLEIESPDGSLLPSAR* 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25121146 25125954 + CsaV3_5G030630.1 Csa05g02244 530631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02244 922 PANTHER TYROSINE KINASE DOMAIN PROTEIN 11 885 - -
Csa05g02244 922 Gene3D Phosphorylase Kinase; domain 1 578 678 - -
Csa05g02244 922 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Csa05g02244 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Csa05g02244 922 SUPERFAMILY L domain-like 396 503 - -
Csa05g02244 922 PANTHER OS07G0107800 PROTEIN-RELATED 11 885 - -
Csa05g02244 922 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672|GO:0006468
Csa05g02244 922 Gene3D Ribonuclease Inhibitor 376 520 IPR032675 -
Csa05g02244 922 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02244 922 SUPERFAMILY Protein kinase-like (PK-like) 589 870 IPR011009 -
Csa05g02244 922 SMART serkin_6 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02244 922 Gene3D Transferase(Phosphotransferase) domain 1 679 899 - -
Csa05g02244 922 Pfam Malectin-like domain 28 360 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00579 Csa-Chr3:5011801 Csa05g02244 Csa-Chr5:25121146 1.23E-72 dispersed
Csa03g03242 Csa-Chr3:29742399 Csa05g02244 Csa-Chr5:25121146 0 dispersed
Csa05g02244 Csa-Chr5:25121146 Csa03g04110 Csa-Chr3:36012252 9.66E-139 dispersed
Csa06g00271 Csa-Chr6:1917786 Csa05g02244 Csa-Chr5:25121146 1.40E-68 dispersed
Csa07g00765 Csa-Chr7:5372466 Csa05g02244 Csa-Chr5:25121146 2.33E-52 dispersed
Csa05g02244 Csa-Chr5:25121146 Csa07g02420 Csa-Chr7:22174989 1.42E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78268 PF12819 Malectin_like 4.60E-87 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02244 - - csv:101207149 1805.8