Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02256 ATGGCGGAAACCGGCGGCGTATATGGGCAGTTTCTAGCGGGGAGTTTAGACCCAACAGCTCAAGAGTTCCGGCCAAGATATTCGACTACTTTGTTTTTGCCGCAACCACCCCATCGGGTTTTCTTTCCGTACCCACCAATTAGCGACGTTCCTCTCCTGCCGTTTTGCGAGACAGGTGTAACTTACCCGCCGTTTACAACGACGGAGTCGGCGTATGTACCGGTACGGTCGCCGGTGTCGTCGGTTGCGACTCGGTCGTTAGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGGAGGGAATTGGAAGTATTTGGGGAGATTCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTTATCATTCATTTCTATGATATTCGCCATGCCGAGAGAGCTTTGCGAGAGATTCGGGATCAGCACATGCACCATCAATGTCGTCTTCGTAACTACTTCAACAATAACAACAACAATAATGGTTTCTTGTTATCAAATTCCTCTCTACCTCGCCCTTCTCCGGCGCCTGGCCTCATCGCCGGCCATGCTGTTTGGGCTCAGTTCATCGTTCCGGCTGGGAAAAATCAGGGCACCATCGTTATCTTCAACCTTGACTCCACCGTTTCCACTTCTTGTCTCAGGGAAATCTTTGAACGTTTTGGTCAAGTGAAGGAGTTGAGAGAGACGCCACTGAAGAAACAACAAAGATTTGTGGAGTTTTTCGACATCAGGGACGCCGGAAAAGCTCTTAAGGAGATGAACGGAAAAGAAATCAATGGAAAATCTGTTTTGATTGAGTTCAGTCGTCCTGGGGGCCATGGGAACAAGTTCTTCAATGCTAACTTAACTACTCCGGCCATCTGTGGCTCGAATAATATATACTCCAGGAGTTCAAAATGCCCACCGTCACGACCTCCCCCTCCGCCGTCGAGAAATTTCTCTGGTGGGGTAGGTTCAAATGTTCCACCTCGGTGGTATTACTCGAAACCCCATGCTTCCTCTAGGAAATGGAATCTCAACAAGGGGAGTCGAAGCCCGAGAAACCCTCGGAAGAGCTCGGAGTCCGATGATGTGTATGAAAAAATGGGTTCCGTTGATTTGAATGCCGGCGGTGAGTGTAATGAAATTGAAGAGCGAGAATCATTTGGGGTTTTGAGTAAGATTTTAAAGAACAGCCATAGTAGTTCTTCTGTTGGTGCTGATCAACAACAAGTGCAGCCCAGTAGGAATAAGCTAAGAAAATGTAGACAATCCAGGAAGTTCGATTCTCGATTCTTGATAAACGATAATGATTCCGATTGCAGAGATTCGAGGACTACTGTGATGATCAAGAACATCCCCAACAAATACAGTCAGAAATTGTTATTGAACATGCTGGACAATCACTGTATTCATTGCAACGAGCAAGTGGGCGATGACCATAACGAGCCACTTTCTTCCTATGATTTTGTATATCTCCCTATTGATTTCAACAACAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCAGAGGCTACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAGGTCACTTATGCTAGAGTACAGGGACTGGAATCACTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACTTGCCAGTGGTGTTTTGGCCTCCTCGGGACGGGAGGAAACTGACGGAGCCAATGCCGATTGGTGGGCAGAGACAGTCAATCACCATTGGCCTCTCAACTACTCCATCTTGTTCTGGGAATGATGAGATGGAGGAGGGTGAAGAAGAAGAAGATGATGTTGCAACAACAACAACAACAACACTGGTTGACCAACAGGAGGAAAGCATGAAAGGAAACAACAACAGCAGCAACAGTAGCAGTGGAAGCATTGATGAAGACGACACAGACGGTGATGAGTATGATCAAGTTTCTTAA 1980 46.72 MAETGGVYGQFLAGSLDPTAQEFRPRYSTTLFLPQPPHRVFFPYPPISDVPLLPFCETGVTYPPFTTTESAYVPVRSPVSSVATRSLVVSSVPCDVSETMVRRELEVFGEIRGVQMERVKEGIVIIHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNNGFLLSNSSLPRPSPAPGLIAGHAVWAQFIVPAGKNQGTIVIFNLDSTVSTSCLREIFERFGQVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVLIEFSRPGGHGNKFFNANLTTPAICGSNNIYSRSSKCPPSRPPPPPSRNFSGGVGSNVPPRWYYSKPHASSRKWNLNKGSRSPRNPRKSSESDDVYEKMGSVDLNAGGECNEIEERESFGVLSKILKNSHSSSSVGADQQQVQPSRNKLRKCRQSRKFDSRFLINDNDSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVGDDHNEPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFWPPRDGRKLTEPMPIGGQRQSITIGLSTTPSCSGNDEMEEGEEEEDDVATTTTTTLVDQQEESMKGNNNSSNSSSGSIDEDDTDGDEYDQVS* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25210618 25214151 + CsaV3_5G030750.1 Csa05g02256 530643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02256 659 CDD RRM1_EAR1_like 84 152 - -
Csa05g02256 659 SUPERFAMILY RNA-binding domain, RBD 200 520 IPR035979 GO:0003676
Csa05g02256 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Csa05g02256 659 CDD RRM3_EAR1_like 441 542 IPR034458 -
Csa05g02256 659 PANTHER TERMINAL EAR1-LIKE 1 34 642 - -
Csa05g02256 659 MobiDBLite consensus disorder prediction 335 363 - -
Csa05g02256 659 MobiDBLite consensus disorder prediction 617 645 - -
Csa05g02256 659 Gene3D - 195 279 IPR012677 -
Csa05g02256 659 MobiDBLite consensus disorder prediction 299 320 - -
Csa05g02256 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Csa05g02256 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 159 IPR000504 GO:0003723
Csa05g02256 659 SMART rrm1_1 86 153 IPR000504 GO:0003723
Csa05g02256 659 SMART rrm1_1 201 269 IPR000504 GO:0003723
Csa05g02256 659 Pfam RNA recognition motif 2 441 551 IPR007201 -
Csa05g02256 659 SUPERFAMILY RNA-binding domain, RBD 79 148 IPR035979 GO:0003676
Csa05g02256 659 PANTHER RNA BINDING PROTEIN 34 642 - -
Csa05g02256 659 MobiDBLite consensus disorder prediction 591 659 - -
Csa05g02256 659 Gene3D - 80 157 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02256 - - - csv:101217639 1248.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02256 Csa-Chr5:25210618 Csa01g01085 Csa-Chr1:6732660 2.08E-08 dispersed
Csa02g01951 Csa-Chr2:18309077 Csa05g02256 Csa-Chr5:25210618 1.58E-25 transposed
Csa06g00775 Csa-Chr6:6216437 Csa05g02256 Csa-Chr5:25210618 5.27E-25 transposed
Csa06g02423 Csa-Chr6:21620827 Csa05g02256 Csa-Chr5:25210618 3.40E-28 transposed
Csa06g03755 Csa-Chr6:29902194 Csa05g02256 Csa-Chr5:25210618 7.61E-27 transposed
Csa02g01786 Csa-Chr2:17285798 Csa05g02256 Csa-Chr5:25210618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
Vvi14g1255 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02256 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54