Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02257 ATGGGAAAGAAGAAAACTGGGGTATTCAGATATGCTGATTGGTTGGATCAGTTGCTAATGTTTCTTGGTTGCTTGGGGAGTATTGGAGATGGGCTTACAACTCCACTCACTATGCTTGTTCTAAGTGGTATGATCAATCACTATTCTGTTTCTGATTCCAACTCTTTTTCAAATCATGTTGTGGACAAGTATACACTCAAGCTGCTTTATATTGCTATTGGTGTTGGACTATGTGCTTTCTTTGAGGGAATGTGTTGGACTAGGACAGCAGAAAGACAAACATCCCGCATCAGAATGGAGTACCTAAAATCAGTTTTGAGACAAGAAGCTAGTTTTTTCGACATTAATCAAGCTGCTTCTTCTACATTTCTTATTGTTTCTTCCATCACTTCTGATTGTCACACTATCCAAGATACCATAGCTGAGAAGATACCAAACTTTCTGGCTCACATCTCAGGCTTTATCTTCTGCATTCCTACTGCATTTGTGCTCTCATGGCAGCTTGCTTTGGCTGCCCTTCCGTTCTCTTTCATGTTTATTATTCCAGGGGTTGGATTTGGAAAGGTTTACAAGAACTTAGGTGTCAAGGCCAAGGTTTCTTATGTGGTTGCTGGTAGCATTGCCGAACAAGCGATCTCTTCAATCCGCACCGTATATTCATACGTAGGAGAGCACCAAACTTTAGAGCAGTTCAGTCATGCACTTCAAAAAAGCATGAACTTTGGCATTAAACAAGGCCTTGGGAGAGGACTTATGATGGGTAGTATGGCAATGATGTATGCTGCTTGGGCATATCAGGCATGGGTTGGTAGTATTCTCGTAACTGAAAGAGGAGAAACAGGTGGAGCCATTTTGATATCTGGAATATGTATCATTTTTGGTGGAATATGTGTTATGAATGCACTCCCAAATCTCTCGTTTATCTCTGAGTCAACAATTGCTGCATCTCGAATTTTCGAGATGGTTGATCGCATTCCTGTCATTGATGCTGAAGATGGTAAAGGAAAAACTTTGGACTGTTTAAGAGGAAAGATTGAATTTAGAGATGTTGAGTTTTCGTATCCGTCAAGACCTGCAACCTCAATTCTTCAAGGACTTAATCTCAAAGTGAATGCTGGGGAGACAGTAGGCCTTGTTGGAGGTAGTGGCTCAGGCAAGTCCACTGTGTTCCATTTACTTGAGAGATTCTATGACCCTGTCAAAGGAGACATTCTTCTTGATGGTCATAGGATAAGGAAGCTTCAACTCAAATGGCTTAGATCTCAAATGGGACTAGTCAATCAAGAGCCAATTCTATTTGCAACGTCCATAAAGGAAAATATTTTGTTTGGTAAGGAAGGAGCTTCAATGCCACTTGTTAAGAGAGCAGCTAAGGCTGCAAATGCGCACGATTTCATTGCAACATTACCTGATGGATATGAAACTCAAGTGGGGCAATTTGGTGTTCAATTGTCTGGAGGGCAAAAGCAAAGAATTGCAATAGCAAGAGCTCTAATCAGAGATCCCAAAATTCTTCTTTTGGACGAAGCAACCAGTGCTTTGGATGTAGAGTCTGAAAGAATTGTACAAGAGGCCTTGGACCAAGCTTCACGTGGAAGAACTACAATCGTCATTGCACACCGTCTTTCAACAATTCAAAAGGCCGATCAAATTCTTGTACTTGAATCAGGTAGAGTAGTAGAGTCTGGTTCTCACAATAAGTTACTTCAAAGAAATAATGAAGGAATTTACAGCAAAATGGTGAAAATGCAGCAATCTCGAATGGAAAATAACCCTTCTAGTTCTTTGTATGATTCTACTGGAGAAACATATCTCCAAAAGACAGTAGGAGGAGCCAGAACTCCATTGACACCATTAAACCAAATATCGGTTCGTCGAAGCAGCCCAATTTGGTACAACAGTCCAATATATTCTATTAGCATGTCATGTCCATACTCGGTCGAGATTGACTCTAGTAATTACAGTTATTGTGAAGGCTTAAAGTATACCTCAAGTTCTTCTCAATCTCCTTCTCAATGGCGAATTTGGCGATTGAATGCACCTGAGTGGAAACAAGCATTGCTTGGTTGCATGGGTGCTGCAGGCACAGGAATTACTCAACCAATATATTCCTATTGCTTAGGAACAGTTGCCTCAGTTTACTTCTTAAAGGACAACGCTGCTCTTAAATCAGACATTAGATTCTATTGCTTCATATTCTTAGGCATAACATGTCTTAGTTTTATATCTAATCTAGTTCAGCATTACAGCTTTGCAATCATGGGAGAAAACTTAACCAAGAGAGTAAGAGAAAAAATGCTTGAAAAAATCATGACCTTTGAGATTGGATGGTTTGATAAAGACGAGAATACGAGTGCCGCTATATGTGCACGACTAGCTCTTGAAGGAAACTTGGTTAGATCTCTTGTAGCAGAAAGAACATCACTATTGGTTCAGGTATCTGTGACAGCTACATTGGCATTTGTGCTTGGATTACTTGTGACATGGAGAGTAGCAATTGTAGCAATTGCTATGCAACCACTTATCATTGGAAGCTTCTATTCAAGAAAGGTTTTGATGAGAAATATATCTGAGAAGGCTAGGAAAGCACAAGGTGAAGGCAGCCAACTAGCTAGTGAAGCCATTACTAACCACAGGACTATTGCTGCATTTTCCTCTCAAGATAGGATTTTGAGTCTGTTTGAAGCTTCAATGGAATTCCCCAAGCAGGATAATGTAAAACAATCATGGATTTCAGGTTTAGGTTTATTCAGCTCCTTATTTCTGACTACAACAACAACAGCTTTGACACTATGGTATGGAGGGAGACTCATAAATCAAGGGTTGGTAACACCAAAACAACTTTTCCAAGCATTTTTCATCTTGATGAGCACTGGAAAGAACATTGCAGATGTAGGAAGCATGTCATCAGATATAGCAAAAGGTGCAAATGCCATAGTATCAATCTTTGCAATTCTAGATAGAAATACTGAAATAGACCCTCAACAACTTGAAGGGGTAAAAGTTAAAGAGACAATTCGTGGAGAAGTAGAATTGAAGAATGTATTTTTCGCATACCCGACAAGGCCTGACCAACTGATCTTCAATGGACTGAGTTTAAAAATTGAAGCTGGAACAACCGTCGCATTGGTTGGGCAAAGTGGTTCGGGTAAATCTACCGTTATCGGATTGATCGAAAGATTTTACGATCCTAAAAAAGGAGTAGTCCGCATTGATGGAATAGACATAAAGAGCTATAATTTGAGAAGTTTGAGGTCACACATTGCTCTAGTGAGTCAAGAACCTGCACTTTTTGCAGGAACTATACGCAATAACATTCTATTCGGGCAAGACGATCGGTCAGAAAATGAAATTAGGAAGGCTGCAAAACTTGCTAATGCTCACGAGTTTATTAGTTCTATGAAAGACGGCTATGAGAGTCAATGTGGAGAAAGAGGAGTTCAGTTATCAGGAGGTCAAAAGCAGAGAATAGCTTTAGCAAGAGCCATATTGAAGAACCCAAAAATCCTTCTACTAGATGAGGCAACAAGTGCTCTGGATAGCATGTCAGAAACTTTAGTCCAAGAAGCATTAGAAAAGATGATGGTTGGCAGAACAAGCCTCGTGGTGGCTCATCGGTTGTCGACTATACAAAAAGCAGATTCAATAGCTGTAATAAAACAAGGTAAGATTGTTGAACAAGGATCACACTCGACTCTACTTGACCATGGACAAAGTGGAGCATACTACTCCCTGATTAACCAGCTAAAAAGTTAA 3756 40.02 MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDKYTLKLLYIAIGVGLCAFFEGMCWTRTAERQTSRIRMEYLKSVLRQEASFFDINQAASSTFLIVSSITSDCHTIQDTIAEKIPNFLAHISGFIFCIPTAFVLSWQLALAALPFSFMFIIPGVGFGKVYKNLGVKAKVSYVVAGSIAEQAISSIRTVYSYVGEHQTLEQFSHALQKSMNFGIKQGLGRGLMMGSMAMMYAAWAYQAWVGSILVTERGETGGAILISGICIIFGGICVMNALPNLSFISESTIAASRIFEMVDRIPVIDAEDGKGKTLDCLRGKIEFRDVEFSYPSRPATSILQGLNLKVNAGETVGLVGGSGSGKSTVFHLLERFYDPVKGDILLDGHRIRKLQLKWLRSQMGLVNQEPILFATSIKENILFGKEGASMPLVKRAAKAANAHDFIATLPDGYETQVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDVESERIVQEALDQASRGRTTIVIAHRLSTIQKADQILVLESGRVVESGSHNKLLQRNNEGIYSKMVKMQQSRMENNPSSSLYDSTGETYLQKTVGGARTPLTPLNQISVRRSSPIWYNSPIYSISMSCPYSVEIDSSNYSYCEGLKYTSSSSQSPSQWRIWRLNAPEWKQALLGCMGAAGTGITQPIYSYCLGTVASVYFLKDNAALKSDIRFYCFIFLGITCLSFISNLVQHYSFAIMGENLTKRVREKMLEKIMTFEIGWFDKDENTSAAICARLALEGNLVRSLVAERTSLLVQVSVTATLAFVLGLLVTWRVAIVAIAMQPLIIGSFYSRKVLMRNISEKARKAQGEGSQLASEAITNHRTIAAFSSQDRILSLFEASMEFPKQDNVKQSWISGLGLFSSLFLTTTTTALTLWYGGRLINQGLVTPKQLFQAFFILMSTGKNIADVGSMSSDIAKGANAIVSIFAILDRNTEIDPQQLEGVKVKETIRGEVELKNVFFAYPTRPDQLIFNGLSLKIEAGTTVALVGQSGSGKSTVIGLIERFYDPKKGVVRIDGIDIKSYNLRSLRSHIALVSQEPALFAGTIRNNILFGQDDRSENEIRKAAKLANAHEFISSMKDGYESQCGERGVQLSGGQKQRIALARAILKNPKILLLDEATSALDSMSETLVQEALEKMMVGRTSLVVAHRLSTIQKADSIAVIKQGKIVEQGSHSTLLDHGQSGAYYSLINQLKS* 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25216771 25221398 + CsaV3_5G030760.1 Csa05g02257 530644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02257 1251 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Csa05g02257 1251 SUPERFAMILY ABC transporter transmembrane region 674 988 IPR036640 GO:0005524|GO:0016021
Csa05g02257 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Csa05g02257 1251 Gene3D - 335 585 IPR027417 -
Csa05g02257 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 12 1248 IPR039421 -
Csa05g02257 1251 SUPERFAMILY ABC transporter transmembrane region 8 329 IPR036640 GO:0005524|GO:0016021
Csa05g02257 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 20 318 - -
Csa05g02257 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1247 IPR027417 -
Csa05g02257 1251 Gene3D - 1000 1251 IPR027417 -
Csa05g02257 1251 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Csa05g02257 1251 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Csa05g02257 1251 PANTHER OS04G0481700 PROTEIN 12 1248 - -
Csa05g02257 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Csa05g02257 1251 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524
Csa05g02257 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02257 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1246 IPR003439 GO:0005524
Csa05g02257 1251 CDD ABC_MTABC3_MDL1_MDL2 1010 1248 - -
Csa05g02257 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 21 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02257 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 584 IPR027417 -
Csa05g02257 1251 Gene3D ABC transporter type 1, transmembrane domain 660 997 IPR036640 GO:0005524|GO:0016021
Csa05g02257 1251 Gene3D ABC transporter type 1, transmembrane domain 8 594 IPR036640 GO:0005524|GO:0016021
Csa05g02257 1251 CDD ABC_MTABC3_MDL1_MDL2 345 584 - -
Csa05g02257 1251 Pfam ABC transporter transmembrane region 688 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02257 1251 Pfam ABC transporter transmembrane region 20 285 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02257 1251 SMART AAA_5 1037 1230 IPR003593 -
Csa05g02257 1251 SMART AAA_5 372 558 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02257 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101217411 2339.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02311 Csa-Chr3:20609983 Csa05g02257 Csa-Chr5:25216771 1.65E-93 dispersed
Csa05g02257 Csa-Chr5:25216771 Csa05g02946 Csa-Chr5:29789176 3.97E-104 dispersed
Csa05g02257 Csa-Chr5:25216771 Csa03g03293 Csa-Chr3:30032241 7.40E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g601 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02617 . . . . . . . Cone19ag1084 . . Lsi04g00630 Csa05g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136