Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02258 ATGAGGGTCCGATCATGGCTAATCCCCTGCTCCAGGGCTGCAGCCACTTCCGCTGCTGAACCCAATCATATTAAACCCCCTCAATCCTCCTCCTTCTTAATGTCCGACGCTAGCAGCTTTTCCGACACCTCGGCCCACTCTTCCTCCTCATCCACTCCTAGTTCCGACACGAGCTCTTCCAGTCTCCAAACCAATCTCTCCCTTCAGTCCCTACCCTCCATTCCATCTCTACAGAAACTCCCCATCCCCACCGATTCCTTCCACGTCACTCTTTCTCAATTCCCCGTTGCCTCTTTTAAGCTCCCTATCTCCCATCTCGCCGTCCATGGTCCTTACCTCTACGTCGCCACCGCTCACGAAATCAACGTCTACGATCGACTCACTTTCTCCCATATCACTGGATTCAACGCTCCAGATTCTTCCTCTGGTTCCGTTAAGGGAATCGCCTTTCTCCCCCGCCAAATACTTACTTCTCACCAAGATGGAAAAATCCGAGTCTGGAATTTACTTCATAAGAAGAACAATCAATTCAAATTAGTCAACACTCTCCCTACAGTCAACGACCGTCTTCGCCGATTTATACTCCCGAAGAATTACGTCAACGTCCGTCGTCACAAGAAACTCCTCTGGATTCAACACGCTGACGCCGTCACCGGACTCGCCGTAAACAACGGTTCCATTTACTCTGTTTCTTGGGATCGGAGTTTGAAAATCTGGCGAGGCTCCGACCACCGTTGCGTCGAGTCGGTGAAAGCAGCTCACGAAGACGCCGTCAACGCGGTGGCTGTTTCCGCCGGGGGGACGGTATATACAGGTTCAGCCGATCGGAAAATACGAGTTTGGGCGAAACCGGAGGCGGAGAAACGGCATGTACTGGTAGCAACTTTGGAGAAGCATAAATCGGCGGTGAACGCATTAGCGTTAAACGAAGACGGTTCGTTACTGTTCTCAGGTGCGTGTGATCGGTCGGTTTTGGTATGGGAAAGAGAAGACAGTGCGAATTACATGGCGGTGATCGGGGCATTGAGGGGTCACAAAAATGCGATACTGTGTTTGATATACGTTTCAGATTTGTTGTTGAGTGGGTCGGCAGATCGGACAGTGAGGGTGTGGCGACGTGGAGGAGATGGGAGTTTTAGTTGTTTAACGGTGTTGGAAGGGCACAAGAAACCGGTGAAGTCGCTGGTGATAGTATCGGAGGCGGAGGGGATGATGAGAAACGGCGGCGTCGTATCGGTGTGTAGTGGGAGTCTTGATGGAGAACTCAAAGCTTGGAAGATTTCACTTTCGAATCTTAATAGTCCATTGCCGAATTCGAATATTATGAATTGCAGCTGA 1338 50.67 MRVRSWLIPCSRAAATSAAEPNHIKPPQSSSFLMSDASSFSDTSAHSSSSSTPSSDTSSSSLQTNLSLQSLPSIPSLQKLPIPTDSFHVTLSQFPVASFKLPISHLAVHGPYLYVATAHEINVYDRLTFSHITGFNAPDSSSGSVKGIAFLPRQILTSHQDGKIRVWNLLHKKNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKLLWIQHADAVTGLAVNNGSIYSVSWDRSLKIWRGSDHRCVESVKAAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPEAEKRHVLVATLEKHKSAVNALALNEDGSLLFSGACDRSVLVWEREDSANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSFSCLTVLEGHKKPVKSLVIVSEAEGMMRNGGVVSVCSGSLDGELKAWKISLSNLNSPLPNSNIMNCS* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25225144 25227550 + CsaV3_5G030770.1 Csa05g02258 530645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02258 445 ProSitePatterns Trp-Asp (WD) repeats signature. 155 169 IPR019775 -
Csa05g02258 445 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Csa05g02258 445 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Csa05g02258 445 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Csa05g02258 445 Pfam WD domain, G-beta repeat 142 168 IPR001680 GO:0005515
Csa05g02258 445 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Csa05g02258 445 Pfam WD domain, G-beta repeat 340 371 IPR001680 GO:0005515
Csa05g02258 445 Pfam WD domain, G-beta repeat 212 239 IPR001680 GO:0005515
Csa05g02258 445 Pfam WD domain, G-beta repeat 246 281 IPR001680 GO:0005515
Csa05g02258 445 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 432 IPR045182 -
Csa05g02258 445 MobiDBLite consensus disorder prediction 22 62 - -
Csa05g02258 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 371 IPR001680 GO:0005515
Csa05g02258 445 MobiDBLite consensus disorder prediction 16 62 - -
Csa05g02258 445 Gene3D - 77 191 IPR015943 GO:0005515
Csa05g02258 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 337 IPR001680 GO:0005515
Csa05g02258 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 281 IPR001680 GO:0005515
Csa05g02258 445 PANTHER F21J9.19 18 432 - -
Csa05g02258 445 SMART WD40_4 128 168 IPR001680 GO:0005515
Csa05g02258 445 SMART WD40_4 378 426 IPR001680 GO:0005515
Csa05g02258 445 SMART WD40_4 204 240 IPR001680 GO:0005515
Csa05g02258 445 SMART WD40_4 289 328 IPR001680 GO:0005515
Csa05g02258 445 SMART WD40_4 243 282 IPR001680 GO:0005515
Csa05g02258 445 SMART WD40_4 335 372 IPR001680 GO:0005515
Csa05g02258 445 Gene3D - 198 287 IPR015943 GO:0005515
Csa05g02258 445 SUPERFAMILY WD40 repeat-like 99 428 IPR036322 GO:0005515
Csa05g02258 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 371 - -
Csa05g02258 445 Gene3D - 288 437 IPR015943 GO:0005515
Csa05g02258 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02258 - - - csv:101204588 809.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00089 Csa-Chr1:541500 Csa05g02258 Csa-Chr5:25225144 4.79E-111 dispersed
Csa01g00821 Csa-Chr1:5171314 Csa05g02258 Csa-Chr5:25225144 2.15E-13 dispersed
Csa05g01637 Csa-Chr5:19461562 Csa05g02258 Csa-Chr5:25225144 8.07E-76 dispersed
Csa05g02258 Csa-Chr5:25225144 Csa07g00816 Csa-Chr7:5720257 2.70E-07 dispersed
Csa05g02258 Csa-Chr5:25225144 Csa03g04173 Csa-Chr3:36627485 3.62E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49