Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02262 ATGGGAGGTAAGAACTCTAGGGAAGCAGGTCGAAGAGAGTTTAGTTCATATGGGTCTGGCAATTCTTCAGCATGGGATCAATACAATTATCCTCCACAATCACCATATGTTCAACAATATCCATATACAGAACCCTCTGAATATGGCTCACAAACTCCACAACAACCACAGAGAAGGCTTGACAGAAAATATTCAAGAATAGCAGATAATTACCAATCCTTGGATGAGGTGACTGCTGCTCTTATTAAAGCCGGACTTGAGTCATCTAATCTCATTGTAGGAATTGATTTCACGAAAAGCAATGAGTGGACAGGTTCAAGGTCGTTTAATCGACGTAGTTTACACCACATTGGAAATGAGCCAAATCCGTACGAGCAAGCTATATCTATAATAGGGCAAACGTTATCATCTTTTGATGACGATAACATGATTCCGTGTTTTGGATTTGGTGATGCATCAACCCATGATCAAGATGTTTTTAGCTTCTACCATGATGATAGAATATGTAATGGATTTGAGGAAGTTTTGCATCGTTATAGGGAAATTGTTCCCGACTTAAGACTTGCAGGTCCTACATCTTTTGCACCAATAATTGAGATGGCCATGACAATCGTTGATCAAACTGGTGGTCAGTACCATGTTTTGCTGATAATTGCCGACGGGCAGGTGACAAGAAGTGTTGACACACATAATGGTCAACTGAGTTTACAAGAACGAAAGACAATCGACGCAATTGTAAGGGCAAGTGAGTACCCTTTGTCGATAGTCTTAGTTGGTGTTGGAGATGGACCTTGGGATACGATGAAGGAATTTGATGATAACATTCCTGCTCGAGCTTTCGATAATTTTCAGTTCGTCAATTTTACTGAGATGATGTCCAATAATGTAAACAATGTGAGAAGGCATGCAGACTTTTGTCTTGCTGCACTGATGGAAATACCTTCTCAATATCAGGCAACTCTAGAGCTTGGCATATTGGGAAGACAAATAGGTAGTTCACCAGAAAGAGTACCTCTTCCTCCTCCTCTGTACAGTGCAACATCTTCAAGTGGCTACCCGGGAACCCCACGCTCCAACAGTTTTCAGACCAGAACATCTTCACTTGGTAGATACAACCAAGGAGTTGGCACAAATCCATCCTCTAGTTCTTCTTATGACAACCAGCGTTGCCCCATTTGTATCGCTAATCCAAAAGATATGGCTTTTGGTTGTGGCCATATGACATGTTGCAACTGCGGAGGAAATCTCGAGTTGTGCCCCATATGCCGAAGCTTTATCCAGACTAGAATAAGGCTTTATTAA 1302 41.55 MGGKNSREAGRREFSSYGSGNSSAWDQYNYPPQSPYVQQYPYTEPSEYGSQTPQQPQRRLDRKYSRIADNYQSLDEVTAALIKAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNEPNPYEQAISIIGQTLSSFDDDNMIPCFGFGDASTHDQDVFSFYHDDRICNGFEEVLHRYREIVPDLRLAGPTSFAPIIEMAMTIVDQTGGQYHVLLIIADGQVTRSVDTHNGQLSLQERKTIDAIVRASEYPLSIVLVGVGDGPWDTMKEFDDNIPARAFDNFQFVNFTEMMSNNVNNVRRHADFCLAALMEIPSQYQATLELGILGRQIGSSPERVPLPPPLYSATSSSGYPGTPRSNSFQTRTSSLGRYNQGVGTNPSSSSSYDNQRCPICIANPKDMAFGCGHMTCCNCGGNLELCPICRSFIQTRIRLY* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25249531 25253237 - CsaV3_5G030810.1 Csa05g02262 530649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02262 433 SMART VWA_4 88 291 IPR002035 -
Csa05g02262 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 433 IPR013083 -
Csa05g02262 433 PANTHER RING-FINGER PROTEIN 1 433 - -
Csa05g02262 433 SUPERFAMILY RING/U-box 384 429 - -
Csa05g02262 433 MobiDBLite consensus disorder prediction 15 58 - -
Csa05g02262 433 Pfam Zinc finger, C3HC4 type (RING finger) 387 428 - -
Csa05g02262 433 MobiDBLite consensus disorder prediction 337 386 - -
Csa05g02262 433 MobiDBLite consensus disorder prediction 343 386 - -
Csa05g02262 433 CDD RING-HC_RGLG_plant 390 433 IPR045317 GO:0061630|GO:0070534
Csa05g02262 433 SUPERFAMILY vWA-like 90 272 IPR036465 -
Csa05g02262 433 ProSiteProfiles Zinc finger RING-type profile. 390 423 IPR001841 -
Csa05g02262 433 PANTHER COPINE FAMILY PROTEIN 1 1 433 - -
Csa05g02262 433 MobiDBLite consensus disorder prediction 1 61 - -
Csa05g02262 433 Pfam Copine 113 326 IPR010734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02262 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00097 Csa-Chr1:571441 Csa05g02262 Csa-Chr5:25249531 1.73E-132 dispersed
Csa01g00098 Csa-Chr1:573151 Csa05g02262 Csa-Chr5:25249531 1.82E-58 dispersed
Csa03g00707 Csa-Chr3:6370601 Csa05g02262 Csa-Chr5:25249531 2.07E-23 dispersed
Csa03g03987 Csa-Chr3:34837370 Csa05g02262 Csa-Chr5:25249531 8.46E-179 dispersed
Csa05g02262 Csa-Chr5:25249531 Csa06g01141 Csa-Chr6:9497206 1.52E-155 dispersed
Csa05g02262 Csa-Chr5:25249531 Csa05g01880 Csa-Chr5:22018130 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
Vvi14g1279 . Blo11g00643 . . . Bpe14g00234 . Bma13g00555 . . . . . . . . Cpe13g00875 . . . . . . . . . . . . . . Cone11ag0092 Cone18ag1382 . . Lsi02g01606 Csa05g02262 . . . . Bda07g01418 . . . . . . . . . Cma15g00367 . . . Cpe01g02320 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136