Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02263 ATGTTTAGCCTTGATCGAATTATGCATAGCAGTGTTATCACGTGGCCATGGCTTCTTCCTCTAACAATGTTGCTATTCTCTTCTCTATTATTCCTCCTTACAAAAAAGATGAAGTTAAATGTGATTGTTCATCATCCTCCAACCCCACCAAAGCTTCCTTTCATAGGTCATCTACATCTGGTCACCTCTCTCCCTCATCGTTCTTTTCGTCACCTTTCAAGAAAATACGGCCCCGTCATGCTCCTCAAACTCGGCTCTATCCCGACCGTTGTAGTCTCCTCCGCCACTGCTGCCAAAGAGGTGTTAAAAGTTCACGACCTTGCCTCATGCAGCCGCCCGCGCTCGACTGCTAATGCAAGATTTTCATACAACTATCTAGACATTGGGTTTGCTCCGTATGGCGATCATTGGAGGAAAGTTCGAAAGATTAGTGTTCTTGAGCTCTTCAGCGCAAGACGAGTGCAATCGTTTCAAAACATAAGAGAAGAAGAGATTGGTGTGATGTTAAACTCCATTTCTCAATCTTCATTATTGTTATCTAATGATCCAGTTGATTTGAGTGAGAAATTTTACTCACTCACTGCAAATATGATAACTCGGATAGCTTTTGGGAAGAAGTTTAGAGGGGGTGAGTTAGATAATGAGAATTTTCAGAAGGTTATTAGAAGAGCAATGGCAGCAGTGGGAAGCTTTTCAGCAGCTGATTATCTTCCTATAGTGGGTTGGATTATTGATTGGGTTAGTGGTGTTCATAGCAGATTGGAGACGAGTTTTAATGAGTTGGATGCTTTTTTTCAACATATAGTGGATGATCGTATCAACTTTAGGGAGAGTTGTTCGTCTCACAATAACAATGGTGATGGATATGATCAAGAGAACATTGTCGATGTTTTGTTGAAAATGGAGAAGAATAGCTCTCAATATGGTGAAGTGAAACTCACCAGAGATTGCATCAAAGCACTCATCATGGATATATTTCTTGCTGGAGTGGAAACAGGAGCCAGCACACTTGTTTGGACAATGGCAGAGTTGATAAAAAATCCAAAGGTAATGAAAAAGCTACAAAATGAGATCAGAAATTGTGTAAAAGAAAATAAAATGGTAAAAGAGAATGACCTTCAGAACCTTGAATATCTAAAAGCAGTGGTGAAGGAAGTGCTAAGGTTACATACACCAGCCCCACTTCTCCTTCCAAGAGAAGCCATGTCTCATTTTAAGCTAAATGGTTATGATATTCTTCCCAAAACTCACATCTACGTCAACGCGTGGGCAATCGGACGGGACCCGGAAATATGGACAAACCCAGAAGAGTTCATACCAGAGAGATTTATAGGAAGTAATATTGATTACAAAGGACAAAATTTCGAGTTATTGCCGTTTGGATCGGGTCGGAGAATTTGCCCTGGAATGAATATGGCAAGCTTTACAGTGGAGCTAGCATTGGCTAATGTATTGTTGTGCTTTGATTGGAAATTAGCAAATGGAATGAAAGAAGAAGATGTGGATATGGAAGAGGAAACTGGTCTTGCTGTTGCTAAGAAATCTCCTCTTCAACTTGTTCCTGTCCATTACTTCAACTCCAAAGCATAG 1590 40.57 MFSLDRIMHSSVITWPWLLPLTMLLFSSLLFLLTKKMKLNVIVHHPPTPPKLPFIGHLHLVTSLPHRSFRHLSRKYGPVMLLKLGSIPTVVVSSATAAKEVLKVHDLASCSRPRSTANARFSYNYLDIGFAPYGDHWRKVRKISVLELFSARRVQSFQNIREEEIGVMLNSISQSSLLLSNDPVDLSEKFYSLTANMITRIAFGKKFRGGELDNENFQKVIRRAMAAVGSFSAADYLPIVGWIIDWVSGVHSRLETSFNELDAFFQHIVDDRINFRESCSSHNNNGDGYDQENIVDVLLKMEKNSSQYGEVKLTRDCIKALIMDIFLAGVETGASTLVWTMAELIKNPKVMKKLQNEIRNCVKENKMVKENDLQNLEYLKAVVKEVLRLHTPAPLLLPREAMSHFKLNGYDILPKTHIYVNAWAIGRDPEIWTNPEEFIPERFIGSNIDYKGQNFELLPFGSGRRICPGMNMASFTVELALANVLLCFDWKLANGMKEEDVDMEEETGLAVAKKSPLQLVPVHYFNSKA* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25258011 25262547 + CsaV3_5G030820.1 Csa05g02263 530650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02263 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Csa05g02263 529 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 Gene3D Cytochrome P450 34 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 SUPERFAMILY Cytochrome P450 46 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 Coils Coil 351 371 - -
Csa05g02263 529 Pfam Cytochrome P450 46 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PRINTS P450 superfamily signature 467 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02263 529 PANTHER CYTOCHROME P450 71B16-RELATED 19 524 - -
Csa05g02263 529 PANTHER CYTOCHROME P450 71B11-RELATED 19 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02263 Csa-Chr5:25258011 Csa05g02270 Csa-Chr5:25298556 0 dispersed
Csa05g02274 Csa-Chr5:25334581 Csa05g02263 Csa-Chr5:25258011 8.64E-177 dispersed
Csa05g02263 Csa-Chr5:25258011 Csa05g02264 Csa-Chr5:25259441 9.22E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02263 - - csv:101216707 1014.99