Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02266 ATGCTTAGCCTTTACGTTTTTGTTCTCTTTTTCTTATGTTCTCTACTCCTCCTAAAAACCAAGAAAAATGTTGAACTTAAACACAACGATGACCATAAATTTCTTCCTCCTCCAAGCCCTCTAAAGCTTCCTTTGTTAGGTCATTTACACCTCCTTGGCTCTCACCCTCATCGCTCCTTGTGGAACCTTTCGAGAACACACAGCCCTGTTATGCTCCTCAAATTCGGCTTTGTCCCGACCGTCATCATTTCCTCCGCAAAGGTTGCAGAAGAGTTGTTCAAACGTCATGACCTTGCTTCATGTAGCCGCCCTTGCTTAGCGGCCACTGCAAAATATTCATACAACTTCTTGGACTTGATTTTTTCCTCTTACAATGATCACTGGAGGGAGCTTCGTAAGATTTGTATCGTCGAGCTCTTTAGTGCAAAACGTGTGCAATCTTTTCAACATATTAGAGAAGAGGGAGTGAATCAACTTATGAATTCCATCTCTCAATCCTCATCTTCTTCAACTCTATTTGATTTTACAGTAAAATCGTATTCTCTCACTGCTAATATCTTGACTAGGATTGTGTTTGGGAAGAGTATTAGAGAGAGTAAAAGTGAACTAGATGATAGTGATGTTGAGGGGGTTATACAAAAAGCGAGCATGGCAATGGGAAGATTCTCGGCAAGTGATTTCTTTCCTAGTTTCGGATGGATTATTGATCGGCTCACTGGTGTTCATGAGCAGCTTGAGAAAAACTTTCAGGAGTTGGATGCTTTTTTAGAACATGTAATCGAGGATCGTATTAACTTTAGGGCAGCTTGTCAAAAAGAAGAAAACATTCTTGATGTTTTGTTGAGAATGGAGAGAGATTGCTATGAATTTGGTTCAATCAAATTCACTCGAGATTGCATTAAGGCAGTTGGCATGAATTTATTTTTAGCTGGAGTGGAAACAGGAGCAAACACACTTGTTTGGACAATGACAGAGCTAGTTAAAAATTCAAAAATAATGAAGAAGCTACAACATGAAATTAGAAGTACCATCATTCAACAAGATCAAGTGAAGGAGAACGAGCTCGAAAAGCTTCAATATCTAAAAATGGTGGTGAAAGAGGCTTTACGGCTTCATCCACCCATCCCACTTCTTCCAAGAGAAACCATGTCTCATTTTAAACTCAATGGTTATGATATCAATCCAAAAACTCGTATTCATGTGAATGCATGGGCAATTGGAAGAGACCCTGATTGTTGGAAAAATCCACAAGAATTTTGTCCAGAGAGATTTATGGAAAGTAATATTGATTACAAAGGACAAAACTTCGAGTTAATTCCATTTGGAGCTGGTAGAAGAGTATGTCCGGGTGTGAATATGGGGATTGCAACAGTAGAGTTAGCATTGGCTAATATGCTACTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATTTAGATATGGAAGAGGAATTTGGTCTTTCAGTTTGGAAGAAATCACCTCTTCAACTTCTTCCAATTCCTTACATAAACTCCAATTAA 1530 38.56 MLSLYVFVLFFLCSLLLLKTKKNVELKHNDDHKFLPPPSPLKLPLLGHLHLLGSHPHRSLWNLSRTHSPVMLLKFGFVPTVIISSAKVAEELFKRHDLASCSRPCLAATAKYSYNFLDLIFSSYNDHWRELRKICIVELFSAKRVQSFQHIREEGVNQLMNSISQSSSSSTLFDFTVKSYSLTANILTRIVFGKSIRESKSELDDSDVEGVIQKASMAMGRFSASDFFPSFGWIIDRLTGVHEQLEKNFQELDAFLEHVIEDRINFRAACQKEENILDVLLRMERDCYEFGSIKFTRDCIKAVGMNLFLAGVETGANTLVWTMTELVKNSKIMKKLQHEIRSTIIQQDQVKENELEKLQYLKMVVKEALRLHPPIPLLPRETMSHFKLNGYDINPKTRIHVNAWAIGRDPDCWKNPQEFCPERFMESNIDYKGQNFELIPFGAGRRVCPGVNMGIATVELALANMLLCFDWKLPNGMKEEDLDMEEEFGLSVWKKSPLQLLPIPYINSN* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25282348 25284576 + CsaV3_5G030850.1 Csa05g02266 530653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02266 509 SUPERFAMILY Cytochrome P450 37 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 Coils Coil 333 353 - -
Csa05g02266 509 Gene3D Cytochrome P450 22 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 Pfam Cytochrome P450 37 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02266 509 PANTHER CYTOCHROME P450 71B11-RELATED 4 505 - -
Csa05g02266 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Csa05g02266 509 PANTHER CYTOCHROME P450 71B16-RELATED 4 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02266 Csa-Chr5:25282348 Csa05g02272 Csa-Chr5:25316097 0 dispersed
Csa05g02265 Csa-Chr5:25272014 Csa05g02266 Csa-Chr5:25282348 0 tandem
Csa05g02266 Csa-Chr5:25282348 Csa05g02267 Csa-Chr5:25286395 0 tandem
Csa01g00899 Csa-Chr1:5594026 Csa05g02266 Csa-Chr5:25282348 6.11E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02266 - - csv:101215975 970.689