Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02270 ATGATGATGAATAGCATTCTCATATGGTTTCCTCTCCTTTTTCTCTTAACTTCTCTACTTCTTCTCAAAACAAAAAAGCTTATTCACAGCAACAACAAGAAGCTTATTACTAATCCTCCTCCAAGCCCTCCAAAGCTTCCTTTATTGGGTCATTTACACCTCCTTGGCTCCCACCCTCATCACTCTTTATGCAACCTTTCACGAACATACGGTCCCATCATGCTTCTGAAACTCGGCTCCATCCCGACCGTCGTCATTTCTTCCGCAACAGCCGCGAGAGAGCTATTCAAACACCATGATCTCGCATCTTGCAGCCGCCCTCGCTTAATGGGAAGTGCAAGATTTTCCTATAACTTTCAAGACCTGAGTTTGTCTCCATATGGCGAGCGTTGGAGAGAGCTTCGAAAGATTTTCATACTCGAGCTCTTTAGTACTAAACGAGTGCAATCATTTCATCATATCAGAGAAGAGGAAGTGAGTTTGCTCATAAACTCAATCTCTCAACAATCCTTAAAATTTTCTTCAAATCCAATTGATTTGGGTGACAAAAGCTATTCTCTTACTGCCAATATTACGACAAGAATTGCTTTTGGGAAGAGCTTTAGAGGGGGTGAACTAGATAACCAAAATTTTCAAAAGGTTATGCGCAGAACAATTGACGCCATTAAAGGCTTCTCAATTAGCGATTTCTTTCCGAGTTTCGGTTGGATTGTTGATCGAATCAGTGGTGTTCATGGGAAGCTGGAGAAGAGCTTTGGTGAGATGGATGCTTTTTTTCAAAAGGTAGTCGATGATCGTATAAACATGGACAAGGGAACTTCTGGAAATGAAGAAAACATTGTTGATGTTTTGTTGAGAATGAAGAGAGACGGCTTTCAATCTGATGCACTCATCCTTACACAAGATTGCATTAAAGCAATAATCAAGGATATCTTTATAGCAGGAGTGGAAACTGGAGCAAACACCATTGTTTGGGCAATGGCAGAGCTAATTAGAAAGCCTAGAGTAATGAAAAAGCTACAAGACCAAATTAGAAGCTACATAAAAAAGGAACAAGTAAAAGAAACGGACCTTGAAAGGCTTCCATATCTAAAAATGGTAGTGAAAGAGGTTCTAAGGTTGCACCCACCAGTCCCACTTCTCATTCCAAGAGAAACCACGTCTCATTTTAAGCTTAATGGTTATGATATACATCCAAAGGCTCATCTTCATGTCAATGTATGGGCCATTGGACGAGATCCAGAGTGTTGGGTTAACCCTGAAGAGTTTATCCCAGAAAGGTTTATAGAAAATAATATTGATTATAAAGGACAAAATTATGAATTATTACCTTTTGGAGGTGGTAGAAGAGTTTGTCCAGGAATGAATATGGGAATCTTTACAGTAGAGTTGACATTGGCTAATTTGTTACTTTGTTTTGATTGGAAATTGGGAGATGGAATGAAAGAAGAAGATGTAGATATGGAAGAGGATTTTTTTGGTATTAGTGTTGCCAAAAAATCACCACTTAAACTTGTTCCCATCCCTTACATAGCTTAA 1539 39.12 MMMNSILIWFPLLFLLTSLLLLKTKKLIHSNNKKLITNPPPSPPKLPLLGHLHLLGSHPHHSLCNLSRTYGPIMLLKLGSIPTVVISSATAARELFKHHDLASCSRPRLMGSARFSYNFQDLSLSPYGERWRELRKIFILELFSTKRVQSFHHIREEEVSLLINSISQQSLKFSSNPIDLGDKSYSLTANITTRIAFGKSFRGGELDNQNFQKVMRRTIDAIKGFSISDFFPSFGWIVDRISGVHGKLEKSFGEMDAFFQKVVDDRINMDKGTSGNEENIVDVLLRMKRDGFQSDALILTQDCIKAIIKDIFIAGVETGANTIVWAMAELIRKPRVMKKLQDQIRSYIKKEQVKETDLERLPYLKMVVKEVLRLHPPVPLLIPRETTSHFKLNGYDIHPKAHLHVNVWAIGRDPECWVNPEEFIPERFIENNIDYKGQNYELLPFGGGRRVCPGMNMGIFTVELTLANLLLCFDWKLGDGMKEEDVDMEEDFFGISVAKKSPLKLVPIPYIA* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25298556 25301650 - CsaV3_5G030890.1 Csa05g02270 530657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02270 512 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 Gene3D Cytochrome P450 32 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PANTHER CYTOCHROME P450 71B16-RELATED 5 509 - -
Csa05g02270 512 SUPERFAMILY Cytochrome P450 40 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02270 512 PANTHER CYTOCHROME P450 71B11-RELATED 5 509 - -
Csa05g02270 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Csa05g02270 512 Pfam Cytochrome P450 40 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02263 Csa-Chr5:25258011 Csa05g02270 Csa-Chr5:25298556 0 dispersed
Csa05g02264 Csa-Chr5:25259441 Csa05g02270 Csa-Chr5:25298556 1.73E-161 dispersed
Csa05g02265 Csa-Chr5:25272014 Csa05g02270 Csa-Chr5:25298556 0 dispersed
Csa05g02267 Csa-Chr5:25286395 Csa05g02270 Csa-Chr5:25298556 0 dispersed
Csa05g02270 Csa-Chr5:25298556 Csa05g02273 Csa-Chr5:25327936 0 dispersed
Csa05g02270 Csa-Chr5:25298556 Csa05g02271 Csa-Chr5:25309859 0 tandem
Csa01g00894 Csa-Chr1:5553408 Csa05g02270 Csa-Chr5:25298556 3.22E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02270 - - csv:101203617 955.281