Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02271 ATGACCTTGGAAATGCACTGTTACATTGTTGAGATGAAGATTGATAGCATTTTCATATGGTTTCCTCTCCTCTTTCTCTCAACTTCTCTACTTCTTCTCAAAACCAAAAGGCTTATTTACAGCAACAACAAGAAGCTTATCATTAATCCTCCTCCAAGCCCTCCGAAGCTTCCTTTATTGGGTCATTTACATCTCCTTGGCTCCCACCCTCATCGCTCTTTATGCAACCTTTCACGAACACACGGCCCCATCATGCTCCTGAAACTCGGTTCTATCCCGACCGTCGTCATCTCTTCCGCAACAGCCGCGAGAGAGCTATTCAAACACCACAATCTCGCATCTTGCAACCGCCCTCGCTTAACAGGAAGTGGAAGATTATCCTACAACTTCCAAGACCTGGCTTTTTCCCCATATGGTGAGCGTTTTAGAGAGCTTCGAAAGATTTTCATACTCGAGCTCTTTAGTACTAAACAATCATTTCATCGTATTAGAGAAGAGGAAGTGAGTTTGCTCATAAACTCAATCTCTCAACAATCCATAAACTTTTCTTCAAATCCAATTGATTTGAGTGAAAAAAGCTATTCTCTTACTGCCAATATTACAACAAGAATTGCTTTTGGGAAGAGCTTTAGAGGGGGTGAATTAGATAACCAAAATTTTCGAAAGGTTATGCATAGAATAACTGGTGTCCTAAAAAGCTTCTCCATTACCGATTTCTTTCCGAGTTTCGGTTGGATTGTTGATCGAATCAGTGGTGTTCATGGGAAGTTGGAGAAGAGCTTTGGTGAGATGGATGCTTTTTTTCAAAAGGTAGTTGATGATCGTATAAACATGGACAAGGCAACTTCTGGAAATGAAGAAAACATTGTTGATGTTTTGTTGAGAATGAAGAGAGATGGCTTTCAATTTGATGAACTCGTCCTTACTCAAGATTGCATTAAAGCACTAATCATGGATATCTTTTTAGCTGGAGTGGAAACAGGAGCAACCACCATTGTTTGGGCAATGACAGAGTTAATTAGAAACCCAAGAATAATGAAAAGGCTACAAACTCATATCAGAAGCCACATAAAAAAAGATCAAGTAAAAGAAAAGGACCTGGAAAGGCTTCCCTATCTAAAAATGGTAGTGAAAGAGGTTCTAAGGTTGCATCCACCAGCCCCACTTCTCCTTTCAAGAGAAATCACATCTCATTTTAAGCTTAATGGTTATGATATACATCCCAAGGCTCATCTTCATGTTAATGTGTGGGCCATTGGACGAGATCCAGAATGTTGGGATAACCCTGAAGAGTTTATCCCAGAAAGATTTATGGAAAATAACATTGATTATAAAGGACAGAATTATGAATTATTACCTTTCGGAGGTGGTAGAAGAGTTTGTCCAGGAATGAATATGGGAATCTTTACAATAGAGTTGACATTGGCTAATTTGTTACTTTGTTTTGATTGGAAATTGGGAGATGGAATGAAAGAAGAAGATGTAGATATGGAAGAGAATTTTGGTCTTGCTGTTGCCAAAAAGTTACCTCTAACACTTGTTCCCGTCCCTTACTTAGCTTAA 1563 39.09 MTLEMHCYIVEMKIDSIFIWFPLLFLSTSLLLLKTKRLIYSNNKKLIINPPPSPPKLPLLGHLHLLGSHPHRSLCNLSRTHGPIMLLKLGSIPTVVISSATAARELFKHHNLASCNRPRLTGSGRLSYNFQDLAFSPYGERFRELRKIFILELFSTKQSFHRIREEEVSLLINSISQQSINFSSNPIDLSEKSYSLTANITTRIAFGKSFRGGELDNQNFRKVMHRITGVLKSFSITDFFPSFGWIVDRISGVHGKLEKSFGEMDAFFQKVVDDRINMDKATSGNEENIVDVLLRMKRDGFQFDELVLTQDCIKALIMDIFLAGVETGATTIVWAMTELIRNPRIMKRLQTHIRSHIKKDQVKEKDLERLPYLKMVVKEVLRLHPPAPLLLSREITSHFKLNGYDIHPKAHLHVNVWAIGRDPECWDNPEEFIPERFMENNIDYKGQNYELLPFGGGRRVCPGMNMGIFTIELTLANLLLCFDWKLGDGMKEEDVDMEENFGLAVAKKLPLTLVPVPYLA* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25309859 25312628 + CsaV3_5G030900.1 Csa05g02271 530658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02271 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Csa05g02271 520 Gene3D Cytochrome P450 44 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PANTHER CYTOCHROME P450 71B11-RELATED 16 517 - -
Csa05g02271 520 Pfam Cytochrome P450 51 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 78 97 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 196 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 SUPERFAMILY Cytochrome P450 51 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02271 520 PANTHER CYTOCHROME P450 71B16-RELATED 16 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02271 Csa-Chr5:25309859 Csa05g02273 Csa-Chr5:25327936 0 dispersed
Csa05g02270 Csa-Chr5:25298556 Csa05g02271 Csa-Chr5:25309859 0 tandem
Csa05g02271 Csa-Chr5:25309859 Csa05g02272 Csa-Chr5:25316097 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02271 - - csv:101215503 964.14