Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02272 ATGAATAGCCTTTCCATTTGTGTCCTTTCTCTTCTCTTTTTCTTATGTTCTCTGATCCTTCTAAAAACCAAGAAAAATGTTGAACTTAAACACAACAATAACCATAAATTTCTTCCTCCTCCAAGCCCTCCCAAGCTTCCTTTGTTAGGTCATTTACACCTCCTTGGCTCTCACCCCCATCGCTCCTTATGGAACCTTTCCAGAACCCACAGTCCCATTATGCTCCTCAAATTTGGCTCCGTCCCGACCGTCATCATTTCTTCTGCAAAGATTGCAAAAGAGTTGTTCAAATGTCATGACCTTGCTTCTTGTAGCCGCCCTCGCTTAGCGGCGACCGCAAAATATTCATACAACTTCTTAGATTTGATTTTTTCCTCTTACGACGATCACTGGAGGGAGCTTCGTAAGATTTATATCGCTGAGCTCTTTAGTCCCAAACGTGTGCAATCTTTTCAACATATTAGAGAAGAGGAAGTGAATCAACTTGTGAATTCCATCTCTCAATCCTCATCTTCTTCAACTCTATTTGATTTTACAACAAAATCGTATTCTCTCACGTCTAATATCATTACTAGGATTGCGTTTGGAAAGAGTACTAGAGGGAGTGAAAGTGAACTAGATGATGGTAATGTTGAGGGGGTTATACAAAGAGCGAGTGCGGCGATCGGATGCTTCTCGGCAAGTGATTTCTTTCCTAGTTTCGGATGGATTATTGATCGGCTCACCGGTGTTCATGGACGACTAGAGAAAAACTTTAAGGAGTTGGATGCTTTTTTAGAACATGTAATTGAGGATCGTATTAACTTTAGGACAGTTTGTCAAAAAGAAGAAAACATTCTTGATGTTTTGTTGAGAATGGAGAGAGATTGCTATGAATTTGGTTCAATGAAATTCACTCGAGATTGCATCAAGGCAGTTGTCATGAATTTATTTCTAGCTGGAGTAGAAACAGGAGCAAACACACTTGTTTGGACAATGTCGGAGCTAGTTAGAAATTCAAAAGTAATGAAGAAGCTACAACATGAAATCCGAAGCACCATAATTGGGCAAGATCAAGTGAAGGAGAACGAGATCGAAAAGCTTCCATATCTAAAATTGGTGGTGAAGGAGGCTTTGAGGCTTCATCCACCCGCCCCAATGTTGCTTCCAAGAGAAACCATGTCTCATTTTAAGCTCAATGGTTACAATATCGATCCAAAAACTCGTATTCATGTGAATGCATGGGCAATTGGAAGAGACACTGATTCTTGGAAAAACCCAGAAGAGTTTTGTCCAGAGAGGTTTATGGAAAGTAATATTGATTACAAAGGACAAAACTTCGAGTTAATTCCATTTGGAGCTGGTAGAAGAATATGTCCAGGTGTGAATATGGGGATTGCAACGGTAGAGTTGACGTTGGCTAATATGTTAATGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATTTAGACATGGAAGAGGAATTTGGTATTACAGTTTCCAAGAAATCACCTCTTCAACTTCTTCCAATTCCTTGCTTCAACTCCAATTAA 1542 39.49 MNSLSICVLSLLFFLCSLILLKTKKNVELKHNNNHKFLPPPSPPKLPLLGHLHLLGSHPHRSLWNLSRTHSPIMLLKFGSVPTVIISSAKIAKELFKCHDLASCSRPRLAATAKYSYNFLDLIFSSYDDHWRELRKIYIAELFSPKRVQSFQHIREEEVNQLVNSISQSSSSSTLFDFTTKSYSLTSNIITRIAFGKSTRGSESELDDGNVEGVIQRASAAIGCFSASDFFPSFGWIIDRLTGVHGRLEKNFKELDAFLEHVIEDRINFRTVCQKEENILDVLLRMERDCYEFGSMKFTRDCIKAVVMNLFLAGVETGANTLVWTMSELVRNSKVMKKLQHEIRSTIIGQDQVKENEIEKLPYLKLVVKEALRLHPPAPMLLPRETMSHFKLNGYNIDPKTRIHVNAWAIGRDTDSWKNPEEFCPERFMESNIDYKGQNFELIPFGAGRRICPGVNMGIATVELTLANMLMCFDWKLPNGMKEEDLDMEEEFGITVSKKSPLQLLPIPCFNSN* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25316097 25318576 - CsaV3_5G030910.1 Csa05g02272 530659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02272 513 PANTHER CYTOCHROME P450 71B11-RELATED 7 509 - -
Csa05g02272 513 Pfam Cytochrome P450 40 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 SUPERFAMILY Cytochrome P450 40 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 Gene3D Cytochrome P450 25 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PANTHER CYTOCHROME P450 71B16-RELATED 7 509 - -
Csa05g02272 513 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02272 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02266 Csa-Chr5:25282348 Csa05g02272 Csa-Chr5:25316097 0 dispersed
Csa05g02268 Csa-Chr5:25291640 Csa05g02272 Csa-Chr5:25316097 0 dispersed
Csa05g02271 Csa-Chr5:25309859 Csa05g02272 Csa-Chr5:25316097 0 tandem
Csa05g02272 Csa-Chr5:25316097 Csa05g02273 Csa-Chr5:25327936 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02272 - - csv:101203858 975.311