Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02273 ATGATGAATAGCATTTTCATATGGTTTCCTCTCATCTTTCTCTCAACTTCTCTACTTCTTCTCAAAACAAAAAAGCTTATTCACAGCTACAACAAGAAGCTGATCATTAATCCTCCTCCAAGCCCTCCAAAGCTTCCTTTATTGGGTCATTTACACCTCCTTGGCTCCTACCCTCATCGCTCTTTATGCAACCTTTCACAAACACACGGTCCCATCATGCTCCTGAAACTCGGCTCCATCCCAACTGTCGTCATCTCTTCCGCAACAGCCGCGAGAGAGCTATTCAAACACCACGATCTCGCATCTTGCAGCCGCCCTCGCTTAACGGGAAGTGGAAGATTTTCCTACAATTTTCAAGACCTGGCTTTATCCCCATATGGCGAGCGTTGGAGAGAGCTTCGAAAGATTTTCATACTCGAGCTCTTTAGTCCTAAACGAGTGCAATCATTTCACCATATTAGAGAAGAGGAAGTGAGTTTGCTCATAAACTCAATCTCTCAACAATCCATAAACTTTCCTTCAAATCCAATTGATTTGAGTGAAAAAAGTTATTCTCTTACTGCTAATATTACAACAAGAATTGGTTTTGGGAAGAGCTTTAGAGGGGGTGAATTAGATAACCAAAATTTTCAAAAGGTTATGCGTAGAACAAATGATGCCATTAAAAGCTTCTCGATTACCGATTTCTTTCCGAGTTTCGGCTGGATTGTTGATCGAATCAGTGGTGTTCATAGGAAGTTGGAGAAGAGCTTTGGTGAGATGGATGCTTTTTTTCAAAAGGTAGTTGATGATCGTATAAACATGGACAAGGGAACTTCTGGAAATGAAGAAAACATTGTTGATGTTTTGTTGAGAATGAAGAGAGATGGCTTTCAATCTGATGCACTCATCCTTACACAAGATTGCATTAAAGCAATAATCATGGATATCTTTGTAGCAGGAGTGGAAACAAGTGCAACCACCATTGTTTGGGTAATGGCAGAGCTAATCAAAAACCCAAGAGTAATGAAAAAGCTACAAGACCATGTCAGAAGCCACATAAAAAAATATCAAATAAAAGAAATGGACCTTGAGAGCATTCCATACCTAAAAATGGTAGTGAAAGAGGTTCTAAGGTTGCATCCACCAGCTTCACTTCTCCTTCCAAGAGAAACCACATCTCATTTTAAGCTTAATGGTTATGATATACATCCCAAGACTCATCTTCATGTCAATGTGTGGGCCATTGGACGAGATCCAGAGCGTTGGGTTAACCCTGAAGAGTTTTTTCCAGAAAGATTTATAGAAATAGAGTTGACATTGGCTAATTTGTTACTCTGTTTTGATTGGAAATTGGAAGATGGAATAAAAGAAGAAGATGTAGATATGGAAGAGGATTTTGGTCTTGCTGCTGCCAAAAAATCACCACTTAAACTTGTTCCCATCCCTTACTTAGCTTAA 1440 39.51 MMNSIFIWFPLIFLSTSLLLLKTKKLIHSYNKKLIINPPPSPPKLPLLGHLHLLGSYPHRSLCNLSQTHGPIMLLKLGSIPTVVISSATAARELFKHHDLASCSRPRLTGSGRFSYNFQDLALSPYGERWRELRKIFILELFSPKRVQSFHHIREEEVSLLINSISQQSINFPSNPIDLSEKSYSLTANITTRIGFGKSFRGGELDNQNFQKVMRRTNDAIKSFSITDFFPSFGWIVDRISGVHRKLEKSFGEMDAFFQKVVDDRINMDKGTSGNEENIVDVLLRMKRDGFQSDALILTQDCIKAIIMDIFVAGVETSATTIVWVMAELIKNPRVMKKLQDHVRSHIKKYQIKEMDLESIPYLKMVVKEVLRLHPPASLLLPRETTSHFKLNGYDIHPKTHLHVNVWAIGRDPERWVNPEEFFPERFIEIELTLANLLLCFDWKLEDGIKEEDVDMEEDFGLAAAKKSPLKLVPIPYLA* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25327936 25330556 + CsaV3_5G030920.1 Csa05g02273 530660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02273 479 PANTHER CYTOCHROME P450 71B11-RELATED 430 476 - -
Csa05g02273 479 PANTHER CYTOCHROME P450 71B16-RELATED 5 429 - -
Csa05g02273 479 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PANTHER CYTOCHROME P450 71B11-RELATED 5 429 - -
Csa05g02273 479 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 Pfam Cytochrome P450 39 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 SUPERFAMILY Cytochrome P450 39 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02273 479 PANTHER CYTOCHROME P450 71B16-RELATED 430 476 - -
Csa05g02273 479 Gene3D Cytochrome P450 27 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02273 - - - csv:101203617 790.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02270 Csa-Chr5:25298556 Csa05g02273 Csa-Chr5:25327936 0 dispersed
Csa05g02271 Csa-Chr5:25309859 Csa05g02273 Csa-Chr5:25327936 0 dispersed
Csa05g02272 Csa-Chr5:25316097 Csa05g02273 Csa-Chr5:25327936 0 tandem
Csa05g02273 Csa-Chr5:25327936 Csa05g02274 Csa-Chr5:25334581 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g617 . . . . . . . . . Cmo18g00751 . Cma18g00748 . . . . . Bhi07g01811 . . . . . . Cla05g02607 . . . . . . . . . . Lsi04g00620 Csa05g02273 Chy10g00837 Cme10g00595 . . . . . . . . . . . Cma04g01781 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216