Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02278 ATGGATGAAGAAAAAAGAGGAGGTGGGCTCGCCGGTTGTACTCGGAAGGCGTTTTTTCGGTCGGCGTCTTGGACTGACCGGTCGCCGTCAAAGCCTCATCATAGTCGAAGTTTAGTGCCTAATAGTAATAAAGCTCGATCATGTTTACCGCCGCTGCAGCCGCTTTCAATTAGCCGCCGGAATGTTGAGGAGTGGCCACGAGCAGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAGTTTGCTAATAAGTCGTCTCAAAGTTCTGAATGTGAACAACCTGTGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTTTTTGATAAGGAATGCTCAAAGATTCTTGATCATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGACAAATTTTGAGGCAGAATCGGATTACTCATGTGCTGAACTGTGTTGGGTTTGTCTGTCCCGAGTATTTTAAGGGTGAATTTGTGTACAAAACACTTTGGTTGCAAGATAGTCCTTCTGAGGATATTACTAGTATTCTCTATAATGTGTTTGATTACTTTGAAGATGTTCGTGAACAAGGTGGTCGGGTTTTCGTGCATTGTTGCCAAGGAGTGTCTAGGTCGACTTCTCTTGTGATTGCATACCTCATGTGGAAGGAAGGACGAAGTTTTCATGACGCTTTTCAATATGTAAAGGCTGCTCGAGGGGTGGCTAATCCAAACTTGGGTTTTGCTTGTCAATTATTGCAGTGCCAGAAGAGAGTACATGCAGTGCCTGCTAGCCCGAATTCAATTTCGAGGATGTATAGGATGGCTCCACATTCATCGTATGATCCGCTTCATCTGGTACCTAAGTTGTTGAACACTCCAACTGTTCAAGGACTTGATTCTCGTGGGGCATTCGTTGTGCACGTTCCTTCAGCAATCTATGTTTGGAAGGGGGAGAAGTGTGACTCTATGATGTTGAATACAGCAAAGGCAGCAGCATCGCAGGTTATCCGATATGAGAAGGCAAAAGGCCCCATCCTTGGCATCAAAGAAGGTGAAGAACCATTAGAGTTTTGGGATGCTCTTGTGAGTGGCCAAAACTCAGCTGATAGTTCTGAAGGGAAAGTTCAAAGACTTGATAGTTCGTATACCAGAGAAGATCGCATCTTGAAAATAACAAGTGTGAAGGTGGGTGGAAGGAAAGTTGAGGAGTATGATCCAGATTTTGAAATCTTTCACAGGGCGATTTCAGGTGGTGTTGTTCCACCTCTCGATCGATTCAATACAGAATCAGAGAATTTTCTTCCCAGTAGAGAAAATGGGTGGGACTCAACCAAAAGGAAGTTCGAAAATGAAACTTCAAAAGATATTGTCACATCTTTTTCAGAATTGGATTGTGACACTAGAGCACCATTTGATGCAATGGATGTGACAGCAAATATTGATGAAGATGCAGAAGTACCTGTTTCTTCAATTGATCTTGCATCTCCACCACTTTCACCGACTGCCTATTTGTGTGGTTCACCTGAATCTTTTGACCATTTTCCAAATAGTAGCTCGGATCGGGGAATAGAAAATTCTAACAAGGAAAGCTCAATCCCAGACGATTCTTTGTCTTTACCAATTCATCCTCTGGGATCACCAGATTCATTTTCCTGTTTTCAAGGAGGTACTAGTCCAAAGGTTGGAACCAAATCCCCTTCACTATCTCCCTCTACATCTGATAATTCTAGTTCTTTTACCTTTTCACCATCATCGTCTAATTGGTCCGACTTATCATATACATCTTCTCGGCAACCTTCACCATCTGACATGGACTCGTTGCATCCGGCTGTTCAAAACTCTTCCATCATAGATAATTTTTGTTTACATCACAAAGAAACACATCCTATCTTTGTAGAGTCCTTTTCCTCTTATCATCCTACATTAAAGCCAGAAAACACCAATTTGACGTCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTAGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAGATAGTTCGATCATCGTCATTTTCTTTAACCGACATAGACGATGATCTGTTGGAGATATCTGGGTGCAGACAATCCAAAGATAAAAACAGTTGTAAAGTTATGAATTTCGATATTGACAGATTTGGAGCTTGCACTGAATTAGAATGCAATTTTGAGGAAGGAAAGCCTCTGGTATTTTACCAGTGGCCTTCATTGAGTAAAACAGCAATCAATCAACTTAAAGGTCTTAATTCTAGATCAGTGTATATGTTGTTCGACCCAGATCTAAATTTGGATTCAAATGGCGGTAACAAACTATTTATCTGGTTGGGGCGTGAAGTTTTGCATGAAAATGATGACAGTCAACCGAAGAGTGACTACAGTGGTTGTCTCCACTGGGAGATGATCGGACATATATTCATCAATAATAAGGGAATTCCTAGAGATACCCGAATACAGGTAATAAGAGAAGGGGAAGAGCCCGAGGAGTTCCTTGCAATTCTAAACCGTTTATTACCTCAAAAAACGGAAGATGTTGATCTATGGTCTGCGAAAACATGA 2583 42.24 MDEEKRGGGLAGCTRKAFFRSASWTDRSPSKPHHSRSLVPNSNKARSCLPPLQPLSISRRNVEEWPRAGSDDLGVWPNPETPREFANKSSQSSECEQPVREFQFKKDKLAFFDKECSKILDHVYLGSDSVAKNRQILRQNRITHVLNCVGFVCPEYFKGEFVYKTLWLQDSPSEDITSILYNVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWKEGRSFHDAFQYVKAARGVANPNLGFACQLLQCQKRVHAVPASPNSISRMYRMAPHSSYDPLHLVPKLLNTPTVQGLDSRGAFVVHVPSAIYVWKGEKCDSMMLNTAKAAASQVIRYEKAKGPILGIKEGEEPLEFWDALVSGQNSADSSEGKVQRLDSSYTREDRILKITSVKVGGRKVEEYDPDFEIFHRAISGGVVPPLDRFNTESENFLPSRENGWDSTKRKFENETSKDIVTSFSELDCDTRAPFDAMDVTANIDEDAEVPVSSIDLASPPLSPTAYLCGSPESFDHFPNSSSDRGIENSNKESSIPDDSLSLPIHPLGSPDSFSCFQGGTSPKVGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYTSSRQPSPSDMDSLHPAVQNSSIIDNFCLHHKETHPIFVESFSSYHPTLKPENTNLTSRGASPSIAERRGSHPPPRMLLPSIEEACKVQRKIVRSSSFSLTDIDDDLLEISGCRQSKDKNSCKVMNFDIDRFGACTELECNFEEGKPLVFYQWPSLSKTAINQLKGLNSRSVYMLFDPDLNLDSNGGNKLFIWLGREVLHENDDSQPKSDYSGCLHWEMIGHIFINNKGIPRDTRIQVIREGEEPEEFLAILNRLLPQKTEDVDLWSAKT* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25348207 25355330 + CsaV3_5G030970.1 Csa05g02278 530665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02278 860 MobiDBLite consensus disorder prediction 24 50 - -
Csa05g02278 860 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 13 839 - -
Csa05g02278 860 MobiDBLite consensus disorder prediction 34 49 - -
Csa05g02278 860 Pfam Dual specificity phosphatase, catalytic domain 123 253 IPR000340 GO:0008138|GO:0016311
Csa05g02278 860 MobiDBLite consensus disorder prediction 506 537 - -
Csa05g02278 860 Gene3D Protein tyrosine phosphatase superfamily 83 257 IPR029021 -
Csa05g02278 860 SUPERFAMILY Actin depolymerizing proteins 261 359 - -
Csa05g02278 860 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 109 256 IPR029021 -
Csa05g02278 860 MobiDBLite consensus disorder prediction 68 92 - -
Csa05g02278 860 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 235 IPR000387 GO:0016311|GO:0016791
Csa05g02278 860 MobiDBLite consensus disorder prediction 508 531 - -
Csa05g02278 860 MobiDBLite consensus disorder prediction 641 665 - -
Csa05g02278 860 CDD DSP 116 250 - -
Csa05g02278 860 PANTHER MKPA PROTEIN 13 839 - -
Csa05g02278 860 Gene3D Severin 267 367 IPR029006 -
Csa05g02278 860 SMART dsp_5 115 254 IPR020422 GO:0006470|GO:0008138
Csa05g02278 860 ProSitePatterns Tyrosine specific protein phosphatases active site. 199 209 IPR016130 GO:0016311|GO:0016791
Csa05g02278 860 MobiDBLite consensus disorder prediction 549 606 - -
Csa05g02278 860 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 257 IPR020422 GO:0006470|GO:0008138
Csa05g02278 860 SUPERFAMILY Actin depolymerizing proteins 756 847 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02278 - - - csv:101203370 1735.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00673 Csa-Chr5:4532432 Csa05g02278 Csa-Chr5:25348207 2.61E-11 dispersed
Csa05g02278 Csa-Chr5:25348207 Csa06g01564 Csa-Chr6:13196304 7.26E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37