Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02281 ATGGAGTCCCATTCCTTAATCATTGCTTTCACCACTTTCCTTGCACTCTCACTGACTCCTTGGCCTGCCCTCGCCAAAGACCCTTGTAATTTCCCGGCGGTGTTCAACTTCGGCGACTCCAATTCTGACACTGGTGGCTTATCTGCTGTCTTTGGCCAAGCCCCACCGCCCAATGGCAGATCCTATTTCCCTGGCCCTGCCGGCCGCTACTCGGATGGCCGCCTTATCGTCGATTTCATAGCGGAAAGCTTTGGGTTGCCACATTTAAGCGCATATCTTGATGCATTGGGAGCGAATTTCAGTCACGGAGCGAACTTCGCGACAGCCGGTTCAACCATTAGACTCCAAAACAGAACTCTTCAGCAGAGTGGATTCAGCCCTATATCTCTTAATGTTCAGTACAACGAATTCTATGACTTCCGACGTAGATCTCAAACTCTTCGAAATGGACTGGGTGGAATCTTTAAGCAATTATTGCCAAAGGAAGAGAGTTTCAGTCGGGCCCTTTACACATTCGATATTGGGCAAAACGATTTGACGAGTGGTTATTTTGCCAACATGACTCTCCACCAAGTTAAACTCTATGTTCCTGATGTTCTTCACCAATTCTCCGAGATCGTCAAGTGGGTGCACAGTCAAGGGGGAAGATTCTTCTGGATCCATAACACGGGGCCAGTGGGGTGCCTTCCCTATGTACTGGACCGCGAGCACGTTCCAGCGTCAGACTACGACCAGTATGGGTGCGCCACTCCTTTCAATGACTTGGCTCAATATTTCAACCGTGGCCTCAAACAAGCCGTCGTGGAACTTCGCAAAGCTTTGCCCGACTCTGCCATTACCTATGTTGATGTTTACTCTCTCAAATACGCTCTCGTTTCCCAACACAAGAAATATGGGTTTGAGTATCCATTGAGAACATGCTGTGGACATGGTGGAAAGTACAACTTCAATGTGAATCTTGGTTGTGGAGGAAAGAAGGAGATAAATGGGAAAGAAGTTTTGATTGGAAAATCATGCAAAAACCCAGAGGTTTATGTGAATTGGGATGGTGTTCATTACACTCAAGCAGCTAACAAATGGATCTTTAATCAAATTAAAGATGGTTCTTATTCAGATCCACCTATCCCTTTGAACAAGGCTTGTCACAAAACTTAA 1155 46.41 MESHSLIIAFTTFLALSLTPWPALAKDPCNFPAVFNFGDSNSDTGGLSAVFGQAPPPNGRSYFPGPAGRYSDGRLIVDFIAESFGLPHLSAYLDALGANFSHGANFATAGSTIRLQNRTLQQSGFSPISLNVQYNEFYDFRRRSQTLRNGLGGIFKQLLPKEESFSRALYTFDIGQNDLTSGYFANMTLHQVKLYVPDVLHQFSEIVKWVHSQGGRFFWIHNTGPVGCLPYVLDREHVPASDYDQYGCATPFNDLAQYFNRGLKQAVVELRKALPDSAITYVDVYSLKYALVSQHKKYGFEYPLRTCCGHGGKYNFNVNLGCGGKKEINGKEVLIGKSCKNPEVYVNWDGVHYTQAANKWIFNQIKDGSYSDPPIPLNKACHKT* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25369782 25372389 + CsaV3_5G031000.1 Csa05g02281 530668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02281 384 Gene3D SGNH hydrolase 23 368 IPR036514 -
Csa05g02281 384 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 29 383 - -
Csa05g02281 384 PANTHER BNAA06G32900D PROTEIN 29 383 - -
Csa05g02281 384 SUPERFAMILY SGNH hydrolase 37 366 - -
Csa05g02281 384 CDD SGNH_plant_lipase_like 32 369 IPR035669 -
Csa05g02281 384 Pfam GDSL-like Lipase/Acylhydrolase 34 365 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02281 - - - csv:101202891 806.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02281 Csa-Chr5:25369782 Csa05g02901 Csa-Chr5:29524157 2.77E-114 dispersed
Csa07g01242 Csa-Chr7:12303329 Csa05g02281 Csa-Chr5:25369782 6.18E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g630 . . . . . . . . . Cmo18g00762 . Cma18g00758 . Car18g00691 . Cpe09g00539 . . . . . . . . . . . . . . . . . . . . Csa05g02281 Chy10g00847 . Blo06g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43