Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02283 ATGGGAATCCTTTATCGCAGTTCTGTGAATAGAAAGCCAAACGATAGCATGAGGCTTATTATAATAACTTTTATGGGAGTATTTTTGGGCTTTTTGATAGGAATATCTTTCCCAACATTATCACTAACAAAGCTAGGTATCCCCTCCGGTCTTATCCCAAAAATTGATGAGATGTATAATACTGACATAAAAGCAGGCTCATCTACCCAAACATCTCAAAACTTTCCATCTACAACAACTGGTAGTGGAGACAAGAATAATTCTCACAATCGGAATGGTACCTCAGAGATTTGGGTTCCATCAAATCCTAGGGGAGCTGAAAGACTAGCCCCAGGAATTGTTGCAGCTGAGTCAGACTTCTATCTACACAGATTGTGGGGTAATCCCCATGAGGACTTAAATACAAAACCAAATTACCTTGTGACCTTCACTGTCGGTTATAAGCAGAAGGAGAACATTGATAAAGCAGTAAAAAAGTTTTCAGAGAACTTCACAATTCTTCTGTTTCATTACGATGGCCGAACAACAGAATGGGATGAATTTGAATGGTCGAAAAGAGCAATTCACGTGAGCGCTCGAAAGCAGAGTAAATGGTGGTATGCCAAGCGATTTTTGCACCCTGACATTGTGGCACCTTATGACTACATCTTTATGTGGGATGAAGACTTGGGAGTTGAGAACTTCGATGCTGAAGAGTATATAAAGTTGGTGAGAAAGCATGGCTTGGAAATTTCACAACCTGGTTTGGAACCTACCAGAGGGTTAACATGGCAGATGACAAAGAAAAGGGATGGTCTTGAAGTTCACAAAGATACGGCGGAAAGGCCAGGATGGTGCACTGAGCCAAATTTGCCTCCTTGTGCCGCTTTCGTAGAAATCATGGCTCCAGTTTTCTCACGAGAAGCTTGGCGTTGCGTCTGGTATATGATTCAAAACGATTTAATACATGGCTGGGGCCTTGATTTTGCCGTTAGAAAATGTGTAGAGCCTGCACATGAGAAGATTGGAGTCGTTGACTCTCAGTGGATCGTTCATCAAGGTCTTCCTTCACTCGGAAGCCAGGGAGAAACTCAAAATGGGAAAGCGCCATGGCAAGGGGTAAGAGAAAGGTGTCGAAAAGAGTGGACAATGTTTCAAAGTCGGTTAGCAAATGCGGAGAAAGCGTATTTCAAGTCATTGGGGATTGATCCTTCAAATTCACCCAAACAGTAG 1212 42.49 MGILYRSSVNRKPNDSMRLIIITFMGVFLGFLIGISFPTLSLTKLGIPSGLIPKIDEMYNTDIKAGSSTQTSQNFPSTTTGSGDKNNSHNRNGTSEIWVPSNPRGAERLAPGIVAAESDFYLHRLWGNPHEDLNTKPNYLVTFTVGYKQKENIDKAVKKFSENFTILLFHYDGRTTEWDEFEWSKRAIHVSARKQSKWWYAKRFLHPDIVAPYDYIFMWDEDLGVENFDAEEYIKLVRKHGLEISQPGLEPTRGLTWQMTKKRDGLEVHKDTAERPGWCTEPNLPPCAAFVEIMAPVFSREAWRCVWYMIQNDLIHGWGLDFAVRKCVEPAHEKIGVVDSQWIVHQGLPSLGSQGETQNGKAPWQGVRERCRKEWTMFQSRLANAEKAYFKSLGIDPSNSPKQ* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25382135 25387097 + CsaV3_5G031020.1 Csa05g02283 530670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02283 403 Pfam Protein of unknown function (DUF707) 101 387 IPR007877 -
Csa05g02283 403 PANTHER PROTEIN, PUTATIVE (DUF707)-RELATED 6 400 - -
Csa05g02283 403 MobiDBLite consensus disorder prediction 66 99 - -
Csa05g02283 403 MobiDBLite consensus disorder prediction 66 101 - -
Csa05g02283 403 PANTHER OS06G0731900 PROTEIN 6 400 IPR007877 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02283 - - - csv:101222926 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01187 Csa-Chr1:7360419 Csa05g02283 Csa-Chr5:25382135 2.21E-77 transposed
Csa01g03345 Csa-Chr1:30016408 Csa05g02283 Csa-Chr5:25382135 1.63E-79 transposed
Csa05g01076 Csa-Chr5:10818809 Csa05g02283 Csa-Chr5:25382135 5.29E-84 transposed
Csa05g01882 Csa-Chr5:22035714 Csa05g02283 Csa-Chr5:25382135 0 transposed
Csa06g01200 Csa-Chr6:10172538 Csa05g02283 Csa-Chr5:25382135 0 transposed
Csa02g01776 Csa-Chr2:17239872 Csa05g02283 Csa-Chr5:25382135 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g637 Blo01g00832 Blo16g01175 Bda01g01741 Bda11g01291 Bpe13g00510 . Bma14g01823 . . Cmo18g00765 . Cma18g00760 . Car18g00695 Sed06g1694 Cpe09g00537 Cpe01g01572 Bhi07g01795 Tan04g0159 Cmetu10g0724 . Hepe10g0049 . . Cla05g02591 Cam05g2782 Cec05g2818 . Clacu05g2784 Cmu05g2632 Cre05g2748 Cone13ag1081 Cone19ag1069 Cone8ag0694 . Lsi04g00600 Csa05g02283 Chy10g00849 Cme10g00581 . . Bda07g01639 Bda11g01291 . Bpe02g01915 Bma01g00541 . . Cmo04g02803 . Cma04g01775 . Car04g01799 . . . . . . . . . . . . . . . . . . . Chy09g00373 .
Vvi14g1280 Blo10g00435 Blo11g00644 . . . . . Bma13g00552 . . . . . . Sed02g0829 . Cpe13g00876 Bhi06g00583 Tan11g0668 Cmetu09g1560 . Hepe02g3066 . Lcy10g1889 . . . . . . . . . . Cone16ag0950 Lsi02g01605 Csa05g02283 . . . . . Bda12g00488 Bpe09g00520 . . . . Cmo04g02803 Cmo15g00378 Cma04g02672 . Car04g02574 Car15g00348 . Cpe01g02321 . . . . . . . Cla09g01891 Cam09g1990 Cec09g2050 Cco09g2146 . . . . . Chy09g00373 Cme09g00438
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000341 6 5 4 6 6 4 7 3 4 4 4 4 6 3 3 7 4 6 5 4 4 4 4 3 3 3 4 8 3 3 134