Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02316 ATGGAGGTCGACGGCGGAGCCATGGGGGGGGCACCTCACCAGAGGAAATTCTCTCTTCCGGTTGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCTCCCCACATGCGAACATTTCATCTCTCTTGGATTTCATTCTGCGCTTGTTTCATTTCCAGTTTCGCCGCCGCTCCTCTGCTCCCGGTGATTCGTGACAACCTGAATTTAACCGATACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCCGGCGCCGTATTCGCACGTATCATGATGGGCTCGGCTTGCGATTTAGTCGGACCACGTATCGCCTCTGCTTCACTCATCCTCATAACTTCACCGGCGGTTTATTTAACCTCTATAGTCTCATCTCCTGTCACGTTTTTCCTCGCCCGATTCTTCACCGGATTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGCTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAATGGCGTCGCCGGCGGCTGGGGGAACTTAGGCGGTGGCGCAACACAGTTAATCATGCCGTATGTTTTCGCCATAATCGAACACATTGGCGCAACGAAATTCACTGCGTGGAGAATCGCTTTCTTCATCCCAGCTTTATTCCAAACGCTTTCCGCCTTCGCGGTTCTCCTCCTGGGAGAGGACACGCCGGACGGGAACTTCGGGCGACTAAAGAAAACAGGGGAAAAGGCAAAAGACAAATTCTCAAAAGTCGTGTACAACGGGGTAACAAATTACAGAGGATGGATTCTGGCATTGACTTATGGGTATTGTTTTGGAGTGGAACTGACGATTGATAATGTAATAGCGAATTACTTTTACGATCGGTTTAATTTGAATCTGCATACGGCGGGAATAGTGGCGGCGAGTTTTGGTCTAGCGAATCTGTTTTCGAGGCCGTACGGTGGAGTGTTGTCTGATGTGGTGGCGAAGAGATTTGGGATGAGAGGGAGACTATGGGCTTTGTGGTTGGTTCAAACAATTGGCGGAATTTTGTGTGTTGTTCTTGGATTGGTTGATTCTTTGAGTTCTTCTATTGCTGTTATGCTTATCTTTTCTGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTCGTTCCTTTCGTCTCCCGAAGGTCACTAGGAGTAATATCGGGGATGACAGGCGGGGGCGGGAACGTCGGGTCAGTGCTAACACAGCTAATATTCTTTAGAGGCAACAGATACACAAAAGAAAGAGGAATAACTCTAATGGGAGTGATGATAATAGCTTGCACTCTACCAATTGTATTGATTTATTTTCCTCAATGGGGAAGTATGCTTTTGGGGCCATCTTCCAAAATTGCTTCTGAGGAAGATTATTACTTATCTGAATGGAGCGATGAGGAGAAGAACAAAGGCTATCATATGGGAAGCCTTAAGTTTGCTGAGAATAGTAGAAATGAAAGAGGCAAAACCCTCAAAGGAACTGCTGATGCTGACGATGATTCCCCACCTCATGTTTAA 1521 47.73 MEVDGGAMGGAPHQRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLNLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRIASASLILITSPAVYLTSIVSSPVTFFLARFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFGRLKKTGEKAKDKFSKVVYNGVTNYRGWILALTYGYCFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVAKRFGMRGRLWALWLVQTIGGILCVVLGLVDSLSSSIAVMLIFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGNRYTKERGITLMGVMIIACTLPIVLIYFPQWGSMLLGPSSKIASEEDYYLSEWSDEEKNKGYHMGSLKFAENSRNERGKTLKGTADADDDSPPHV* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25626003 25628442 + CsaV3_5G031350.1 Csa05g02316 530703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02316 506 Gene3D MFS general substrate transporter like domains 241 444 IPR036259 -
Csa05g02316 506 CDD MFS_NRT2_like 43 436 IPR044772 GO:0015112
Csa05g02316 506 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 1 492 - -
Csa05g02316 506 Gene3D MFS general substrate transporter like domains 36 231 IPR036259 -
Csa05g02316 506 SUPERFAMILY MFS general substrate transporter 37 439 IPR036259 -
Csa05g02316 506 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 492 IPR044772 GO:0015112
Csa05g02316 506 Pfam Major Facilitator Superfamily 47 403 IPR011701 GO:0022857|GO:0055085
Csa05g02316 506 MobiDBLite consensus disorder prediction 482 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01336 Csa-Chr1:8647199 Csa05g02316 Csa-Chr5:25626003 0 dispersed
Csa01g01337 Csa-Chr1:8648404 Csa05g02316 Csa-Chr5:25626003 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02316 K02575 - csv:101212365 941.028