Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02318 ATGAGTAAACCTTTCAACTTCTCCTTTCTCATTCCCTTCCTTCTAATGCTCTCCTTCTTTCGTCTCCCTATCCAATCATCAGCTGATCCTAGAGCCACTGAGGCGGCGCTAATATGTTCCAACAACACCGCTTCGCCGGCGGAGCGATCGACCTTCGTGGCGAATTTTTTGGACTCTATGGATGCTGTTACTCCACTTATTGCTTCACAGCGATTTGCTGCCGTTATAAATGGGACTGGAAATACGACTGTTTATGCTTTTGGGGAGTGTATGAATGATCTTTCTCAAGCGGATTGCGATCTTTGTTTTGCCCAGATGAAAACTCAGGTCCTGCGGTGTCTTCCATTTCAGCTTGCTACTCGTGGGGGTAGGTTGTTCTATGATGGGTGTTTTGTTAGGTATGATTATTATAATTTCTTTAACGAATCTTTGAGTGCTGTGGATAGGACTGTATGTGGGAAATTGGATTATAGTGGGAATCGGAGTGTTTTTAGTGATTCAGCGATGAAATTGGCGAGGAATTTGAGTGTTGTAGCGCCAAAGAATGATGGGTTTGCTGTAGGATCGGTGGATTTTAGGAATGTGTCTGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAGAGGGAGTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGAAATTGGTTCTTGTCCTCCAAAAAGTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAAAAATTTTATTTCAACACCACTGCAACCGCCACTGGAGGAAATAACAGTCGTCGTCTGGCGATAATTTTGGCTTCAGTATCTGCAGCCGTGGCTGCTGCATTGATTATTTCAACGGTCCTTTTCTGTGCCAGAAGGAGAGTCTTGAGGAAGCGCAACGAGAAAAGGCAACTGGGGCCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCATATGAGACCCTTGAGAAGGCCACAAATTACTTTGACCAATCCAATAAACTGGGACAAGGAGGTTCCGGTTCAGTTTATAAAGGAACTCTATCAGATGGTAGAGTTGTAGCGATCAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGACCATTTCTTCAATGAAGTAAATCTTATTAGCGGCATCCGACATAAAAATCTTGTAGGCCTGCTTGGATGCAGTATTACGGGCCCTGAAAGCCTCCTTGTTTATGAATATGTGCCCAATCAGAGCTTGCACGATTACCTTTTTGGTAACAAGAACGTCCAGCCACTGAGTTGGCAATCGAGATTTAAGATTGTCTTAGGTACAGCTGAAGGCTTGGCTTATCTCCATGAGGAGTCGAATGTGAAAATCATTCATCGTGACATAAAATTAAGCAATATTCTGCTGGATTATGATTTTACCCCAAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCTGAAGATAAGACACACATTAGTACTGCAATTGCTGGCACACTAGGTTATATGGCACCAGAATATGTAGTTCGTGGCAAGTTATCAGAAAAGGCAGACGTTTATAGTTTTGGAGTTTTTGCCATCGAAGTTATCACTGGAAGAAGAAATGGTCACTTCTATCAAGATTCAACGTCCATCTTACAAAAGGTATGGAATCTTTATGGAGAGGGAAGGCTATATGCAGCTGTTGATCCAATCCTTGCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGTGTGCAAGCCTTTGCAGACCTACGGCCATCCATGTCAATGGTTGTGAAAATGCTTACAGCAAATTACGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAAGCATGAAACCTCAGAATTCCTCAGACTCATCCAATCCCAATTTGTATTACAACTCACGGACCTCTCAAAATAGCATGACCCAAAGCATTATCGACCCTAGATAA 1956 42.79 MSKPFNFSFLIPFLLMLSFFRLPIQSSADPRATEAALICSNNTASPAERSTFVANFLDSMDAVTPLIASQRFAAVINGTGNTTVYAFGECMNDLSQADCDLCFAQMKTQVLRCLPFQLATRGGRLFYDGCFVRYDYYNFFNESLSAVDRTVCGKLDYSGNRSVFSDSAMKLARNLSVVAPKNDGFAVGSVDFRNVSVYGLGQCWKFVRGSSCSKCLVDAAKEIGSCPPKSEGRVLNAGCYFRYSTEKFYFNTTATATGGNNSRRLAIILASVSAAVAAALIISTVLFCARRRVLRKRNEKRQLGPLVAIVNKSKLNFSYETLEKATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWQSRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDYDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNGHFYQDSTSILQKVWNLYGEGRLYAAVDPILAGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSGSMKPQNSSDSSNPNLYYNSRTSQNSMTQSIIDPR* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25639895 25644173 + CsaV3_5G031370.1 Csa05g02318 530705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02318 651 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 22 620 - -
Csa05g02318 651 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Csa05g02318 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Csa05g02318 651 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 620 - -
Csa05g02318 651 ProSiteProfiles Protein kinase domain profile. 329 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02318 651 SMART serkin_6 329 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02318 651 Gene3D - 33 139 IPR038408 -
Csa05g02318 651 Gene3D - 146 248 IPR038408 -
Csa05g02318 651 Pfam Protein kinase domain 330 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02318 651 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Csa05g02318 651 Pfam Salt stress response/antifungal 157 245 IPR002902 -
Csa05g02318 651 Gene3D Phosphorylase Kinase; domain 1 290 404 - -
Csa05g02318 651 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Csa05g02318 651 CDD STKc_IRAK 335 598 - -
Csa05g02318 651 MobiDBLite consensus disorder prediction 615 651 - -
Csa05g02318 651 ProSiteProfiles Gnk2-homologous domain profile. 145 248 IPR002902 -
Csa05g02318 651 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Csa05g02318 651 MobiDBLite consensus disorder prediction 607 651 - -
Csa05g02318 651 SUPERFAMILY Protein kinase-like (PK-like) 315 635 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03960 Csa05g02318 CCT
Csa03g03960 Csa05g02318 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01763 Csa-Chr2:17186289 Csa05g02318 Csa-Chr5:25639895 4.25E-168 dispersed
Csa05g02318 Csa-Chr5:25639895 Csa06g03551 Csa-Chr6:28857428 3.42E-109 dispersed
Csa01g02203 Csa-Chr1:19103640 Csa05g02318 Csa-Chr5:25639895 7.29E-97 transposed
Csa02g01762 Csa-Chr2:17182714 Csa05g02318 Csa-Chr5:25639895 9.36E-08 wgd
Csa03g03960 Csa-Chr3:34624574 Csa05g02318 Csa-Chr5:25639895 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78271 PF00069 Pkinase 8.40E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02318 - - csv:101218749 1267.29