Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02319 ATGGAAGAAATGTACGGTTTACAATCCTCGGCGGAGTATTCAGATAAGGCTTTGATGTCACCGGAGAATCTGATTCTTCCACCGGATTATCAGAGCCTTCTAGTCAGTTCTGGAGAGTTTCGCGATCGGATTCCCGTGTTTGGATCCAACGAACTTCTTTCAGCTGCAGCATCTGCGATTTCGGAAGCTGAAGCAGCATCGATCACGCCGGATATTCAACGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTTGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACGTATTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAAAGGCCTTTCGATGAAGCAACTACGTTCTTGAATAAGATTGAACTTCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGTCTTTCTGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAGGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAACTTCTACGTAGATTTGGGAGTCATATTAGTACCTTGAAATTGGAGTTCTCAAAGAAAAAAAAAAAAGGAAAATTACCTAAAGAAGCCAGGCAAACTCTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAAGTAGCATTGGCAGAGAGAACGGGGCTTGACCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGAAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGTCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 975 44.72 MEEMYGLQSSAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPDIQREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25644124 25651196 - CsaV3_5G031380.1 Csa05g02319 530706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02319 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Csa05g02319 324 Gene3D - 239 313 - -
Csa05g02319 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Csa05g02319 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Csa05g02319 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Csa05g02319 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Csa05g02319 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Csa05g02319 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Csa05g02319 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Csa05g02319 324 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
Csa05g02319 324 SMART HOX_1 242 307 IPR001356 GO:0003677
Csa05g02319 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Csa05g02319 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Csa05g02319 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Csa05g02319 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Csa05g02319 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01861 Csa-Chr2:17710802 Csa05g02319 Csa-Chr5:25644124 1.01E-71 dispersed
Csa05g02319 Csa-Chr5:25644124 Csa06g03487 Csa-Chr6:28557436 3.39E-72 dispersed
Csa02g00505 Csa-Chr2:3550422 Csa05g02319 Csa-Chr5:25644124 1.77E-82 transposed
Csa01g00143 Csa-Chr1:865316 Csa05g02319 Csa-Chr5:25644124 2.16E-58 wgd
Csa02g01760 Csa-Chr2:17169389 Csa05g02319 Csa-Chr5:25644124 1.27E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31811 PF03791 KNOX2 1.20E-24 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02319 - - csv:101211876 621.313