Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02325 | AACTCTTGGCTATCCTTTCAACTCACTGAGATTTGTTTGTTCTTTTGTTCTAAAACAATGAACCATCTCTTTGATCTGCCCGAAAAGATTTGTTATGTACAATGTGGAATCTGTACCACTATTTTGTTGGTCAGTGTGCCGTGTAGTAGCTTGTCAATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTTTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGACGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCACAAAGAAGCCTTTAGAACAGCAGCAAAAAACTGGGCAAATTTCCCTCCAATCCAAGAAAAGGATGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGTTCATAAGGAAGGCATTCATTTTTTGACATAA | 645 | 39.69 | NSWLSFQLTEICLFFCSKTMNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVHKEGIHFLT* | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 25681639 | 25683407 | + | CsaV3_5G031440.1 | Csa05g02325 | 530712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02325 | 214 | PANTHER | AXIAL REGULATOR YABBY 4 | 19 | 201 | - | - | |
Csa05g02325 | 214 | PANTHER | PROTEIN YABBY 6-RELATED | 19 | 201 | IPR006780 | GO:0007275 | |
Csa05g02325 | 214 | SUPERFAMILY | HMG-box | 123 | 179 | IPR036910 | - | |
Csa05g02325 | 214 | Gene3D | High mobility group box domain | 128 | 209 | IPR036910 | - | |
Csa05g02325 | 214 | Pfam | YABBY protein | 27 | 181 | IPR006780 | GO:0007275 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02325 | Csa-Chr5:25681639 | Csa06g02479 | Csa-Chr6:22073762 | 6.78E-38 | dispersed | |
Csa05g02325 | Csa-Chr5:25681639 | Csa02g01755 | Csa-Chr2:17137021 | 1.02E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31812 | PF04690 | YABBY | 6.80E-58 | CL0114 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02325 | K25796 | - | csv:101211641 | 449.514 |