Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02325 AACTCTTGGCTATCCTTTCAACTCACTGAGATTTGTTTGTTCTTTTGTTCTAAAACAATGAACCATCTCTTTGATCTGCCCGAAAAGATTTGTTATGTACAATGTGGAATCTGTACCACTATTTTGTTGGTCAGTGTGCCGTGTAGTAGCTTGTCAATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTTTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGACGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCACAAAGAAGCCTTTAGAACAGCAGCAAAAAACTGGGCAAATTTCCCTCCAATCCAAGAAAAGGATGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGTTCATAAGGAAGGCATTCATTTTTTGACATAA 645 39.69 NSWLSFQLTEICLFFCSKTMNHLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVHKEGIHFLT* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25681639 25683407 + CsaV3_5G031440.1 Csa05g02325 530712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02325 214 PANTHER AXIAL REGULATOR YABBY 4 19 201 - -
Csa05g02325 214 PANTHER PROTEIN YABBY 6-RELATED 19 201 IPR006780 GO:0007275
Csa05g02325 214 SUPERFAMILY HMG-box 123 179 IPR036910 -
Csa05g02325 214 Gene3D High mobility group box domain 128 209 IPR036910 -
Csa05g02325 214 Pfam YABBY protein 27 181 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02325 Csa-Chr5:25681639 Csa06g02479 Csa-Chr6:22073762 6.78E-38 dispersed
Csa05g02325 Csa-Chr5:25681639 Csa02g01755 Csa-Chr2:17137021 1.02E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31812 PF04690 YABBY 6.80E-58 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02325 K25796 - csv:101211641 449.514