Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02327 ATGGGTTCTGAAGGACCAAGTGGGGTTACAATTCATGTGACTGGATTTAAGAAATTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATTGTCAGTGACTTGAAGGCTTTCGTAGAAGAAAAAGGGTTACCTGCTGGTGTCACTCTTGGAAGTTGTACAGTTCTTGATGCTGCTGGAGATGGTGCTCTTCCAGTGCTCCAAAAAGTTTTGGAATCTGGCGTCTCAAATGTCACTGAAACCAACAAAGTCGTATGGCTTCATTTGGGTGTCAATAGTGGTTCAACGAGGTTTGCTATTGAATGGCAAGCTGTGAATGAAGCTACTTTCCGTTATGCAGATGAACACGGATGGCAGCCTCAGAAACTTCCAATAGTCTCCGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCAGCACTGGTGATCTTAGAGAAGTTGAAGGCGAAAAGCTATAACGTGATATTATCAACGGATGCGGGTCGTTTTGTTTGCAATTATGTATATTACCACTCCCTCAGATTTGCAGAACAGAAGGGTCACAAATCATTGTTTGTCCATGTTCCTCTGTTTTCAAAAATCGACAAAGAAACCCAGATGCGTTTCATTCACTCACTTTTAGAAGCCATTGCGTCTACATGTTAA 648 42.75 MGSEGPSGVTIHVTGFKKFHGVAENPTEAIVSDLKAFVEEKGLPAGVTLGSCTVLDAAGDGALPVLQKVLESGVSNVTETNKVVWLHLGVNSGSTRFAIEWQAVNEATFRYADEHGWQPQKLPIVSEDGEISMIRKTSCSALVILEKLKAKSYNVILSTDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDKETQMRFIHSLLEAIASTC* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25686869 25688544 + CsaV3_5G031460.1 Csa05g02327 530714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02327 215 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 10 212 IPR036440 -
Csa05g02327 215 CDD Peptidase_C15 9 213 IPR000816 GO:0005829|GO:0006508|GO:0016920
Csa05g02327 215 Gene3D - 9 215 IPR036440 -
Csa05g02327 215 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 1 215 IPR016125 -
Csa05g02327 215 PIRSF Pyrrolidone-crbxlat_pptds 8 215 IPR000816 GO:0005829|GO:0006508|GO:0016920
Csa05g02327 215 Pfam Pyroglutamyl peptidase 11 193 IPR016125 -
Csa05g02327 215 PANTHER BNAA09G31040D PROTEIN 1 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02327 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] - csv:105435561 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02680 Csa-Chr1:23814090 Csa05g02327 Csa-Chr5:25686869 1.82E-100 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g674 . . . Bda11g01272 Bpe13g01469 Bpe10g00842 . Bma15g00181 . Cmo18g00794 . Cma18g00792 . . . Cpe09g00510 Cpe01g01540 . . . . . . . Cla05g02551 Cam05g2739 . Cco05g2811 . Cmu05g2593 Cre05g2708 Cone13ag1049 Cone19ag1039 . . Lsi04g00559 Csa05g02327 . Cme10g00533 Blo06g00881 . . Bda11g01272 . . . Bma06g00616 . . . . . Car04g01774 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002246 3 3 2 4 3 1 1 1 1 1 2 1 2 2 2 3 1 5 3 1 2 2 2 2 2 1 2 4 2 2 63