Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02335 ATGTCGGAACTTCAACAACAACAACCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCCGGCTTATGTTTATCCCGACACTGCCGCCACGTCCGCCGGCAGCCAAGTTCCTCCGCCTCACCATTCCAACGGCTCATTTGGGGCAGTTTTTATAGTTCTTGCCGTTATTGTTGTCATTTCAGCTCTTGCTTGTTTCCTTGGCCGTCTCTGTAACCGTCGAGTTGAAAACCATCAGAGGCCGAAGCCGGAGAAAAGCCACAGCGGCGCTCGACCCACTAGAGGAAAAGAACCTAAATTGCATCCTGATAAAGAAGGAGACATTGAATTTGGATTTGATTTGAGAAACCCAAGTGGGAAAGGCAAATTCCCATCTGGTGGCAATGGAAGTACTGGCAATGGAAATGGAGGAAGCAAAGGGAAAGGCAATGGTAATGGACCTATTGGGCTTAATGGGCCTAATGGCCATGGAAATAGCTTCAAACCCTTTGAAAATGGAGGGGAAACAAGAAGTGAAATCAAACATACAGACCATCATGAAGGAGATTTCAATTTCAAAGCTGCAGGGCATCATCATAGTCAGTTGAGAAGAAGGAATCGAAAGCCAGAGACAATGAGAAGCTTTGAAGAAGCTCTGGAATTTCTCAGGCCTTTAGTAGAGATCAAACTTTGGGATTACTGCATTGTTTGGAAATCAAGAGATGATGATTCTTTAAGGTTTATCGATTGGGTTGGTTGCTGCTGTAGCGGTGGAGTTTCTGGTGCCGGTGGGAAGGAGGAAGCTGGAGAGACGATACCGGCTGCGCTTTGTAAAGATACTCGATTTCGACATTTTAGAAGGACAAACGCTTGCCAAGCACTTGCTCAGTTTCCTTCTTCAATATCATTAAACACTGGGGTTCATGGTGATGTTTCGATTTCGAATCAACCCATGTGGCTAACAAGTGGTGAAGTTTCTTATTTTTCAAGTTTTTCACATGAGTTGACTGGAACTCGAGTTCTGATTCCAGTTTCTGGTGGCATTGTGGAGCTTTTTGCTACAAAACGTATGCCAAGAGAGGGTGAGGTTATAGACTTTGTAATGGCTCACTGTAACTTCTCTCTGGGGCAAGAATTTGAAACAGAGAGTGCATTGAATGCTGGACTCAATGAGAAGATACTTAATTCATCTACCAAATACTATTCACTAAACTGGCCTGATCCTCAGGCCATCCTTGGTTTCAAATCCAAATTAGAAACTCTTCCTTCAGTATCTCAGTCCAGCTCCTTTCCTGGCTGTGGTGAAGGATCATCCAGTGGCTCAAAGCCTTCACCTGGACTCTTCAACCAACCAATCCGCACGTCTTTTGAATCGAAAGCGGGGATGCGCCAAGAAGATTTGCTAGAACAACAGAGGAATGTGGTTTTGGATCATTCGAAGATCTTGCAGAAAGATGAAGCCAAAACTGGAGAGAAACAAGAAAAGGAAGTTTACAAATCCAAGAATCTCATGACAGAGAGGAGGAGAAGAAACAAGATTCGTGATCGTCTTTACACTCTACGTGCTTTAGTTCCTAATATATCCAAGATGGATAGAGCATCAATCATTGTGGATGCTATCGGCTATATAAGAGAGCTGGAAGAGAATGTGAAAAGCCTACAAAATGAGCTCATTCAGTTGGAGCACAAGGATTGTCAAAAGAACAAACACTTGAAGGTTTCTCCATTAGAGAAGACAAATGATGACATTAATAGTTGGCCTTTCGTTCAGGATGATCAACCTATGTTTATCCTTGATGAGGAGAAGCCTATGGAGGTGGAAGTCGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAGCTATTCTGCAAGCGGAAACAAGGCGGTGTAGTGAGCTCGATTGAGGCGATGGATTCGTTAGGCTTGCAGGTTATTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTCAACATTTTCCATGTTGAGGCTAATGAAAATGACATTCAACCAAAGAGATTGAGAGACTCACTGATCAAGCTAACAAGCTGA 2037 43.59 MSELQQQQPQQQQQQQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISALACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPSGGNGSTGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTDHHEGDFNFKAAGHHHSQLRRRNRKPETMRSFEEALEFLRPLVEIKLWDYCIVWKSRDDDSLRFIDWVGCCCSGGVSGAGGKEEAGETIPAALCKDTRFRHFRRTNACQALAQFPSSISLNTGVHGDVSISNQPMWLTSGEVSYFSSFSHELTGTRVLIPVSGGIVELFATKRMPREGEVIDFVMAHCNFSLGQEFETESALNAGLNEKILNSSTKYYSLNWPDPQAILGFKSKLETLPSVSQSSSFPGCGEGSSSGSKPSPGLFNQPIRTSFESKAGMRQEDLLEQQRNVVLDHSKILQKDEAKTGEKQEKEVYKSKNLMTERRRRNKIRDRLYTLRALVPNISKMDRASIIVDAIGYIRELEENVKSLQNELIQLEHKDCQKNKHLKVSPLEKTNDDINSWPFVQDDQPMFILDEEKPMEVEVEVMQINERDFLIKLFCKRKQGGVVSSIEAMDSLGLQVIDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTS* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25725825 25732273 + CsaV3_5G031540.1 Csa05g02335 530722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02335 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 215 361 IPR025610 -
Csa05g02335 678 MobiDBLite consensus disorder prediction 1 25 - -
Csa05g02335 678 Coils Coil 1 21 - -
Csa05g02335 678 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 490 556 IPR036638 GO:0046983
Csa05g02335 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 491 540 IPR011598 GO:0046983
Csa05g02335 678 MobiDBLite consensus disorder prediction 419 446 - -
Csa05g02335 678 Pfam Helix-loop-helix DNA-binding domain 494 541 IPR011598 GO:0046983
Csa05g02335 678 MobiDBLite consensus disorder prediction 124 141 - -
Csa05g02335 678 Coils Coil 530 557 - -
Csa05g02335 678 MobiDBLite consensus disorder prediction 78 171 - -
Csa05g02335 678 MobiDBLite consensus disorder prediction 78 112 - -
Csa05g02335 678 CDD ACT_UUR-ACR-like 613 675 - -
Csa05g02335 678 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 264 678 - -
Csa05g02335 678 PANTHER TRANSCRIPTION FACTOR BHLH90 264 678 - -
Csa05g02335 678 Gene3D - 482 558 IPR036638 GO:0046983
Csa05g02335 678 SMART finulus 497 546 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02335 - - - csv:101215974 885.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00670 Csa-Chr2:5179234 Csa05g02335 Csa-Chr5:25725825 1.59E-16 dispersed
Csa05g01831 Csa-Chr5:21650877 Csa05g02335 Csa-Chr5:25725825 5.81E-29 dispersed
Csa05g02335 Csa-Chr5:25725825 Csa06g01239 Csa-Chr6:10430376 2.85E-18 dispersed
Csa05g02335 Csa-Chr5:25725825 Csa01g02184 Csa-Chr1:18957508 7.17E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g697 Blo01g00396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02335 . Cme10g00524 . . . . . . . . . . . Cma04g01734 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31813 PF14215 bHLH-MYC_N 2.30E-15 CL0161 Csa TF