Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02336 ATGTCTTCTTCAAACGATACTTCTTCTCCTTCATCGGATTCTGTTTCAGATTCAAGTTTGCCGCCTGAAGCTTCGGATTCTTCTCCTCCTCCTCCTCCTTCTCCTTCTTCGGACTCTTCTTCTCCTCCTCCTTCACCTTCTACTCCACCGTCACCGGTGCCAGATGATATTTCATCGTTGACATTGAATCAATCTAATGGTCCTTCGCCGTCGACTTTTCCATCCGCAATTAAAGCTCCACCTATCGACGGTGAATCTTCGCCATCTTCCTCGCCTCCAGCTCCTCCAAATCCTGGAACTACACCGCCGGCTCCTACTGGCGGCTCCGATTCAAATGATTCCGACGAGACTCCATCGCCACCGCCTGAAGACTCTGCTTCGCCACCACTGTCTCCTCCGCCGTCGCCTCGTCCACCACCGCCTTCGCCACCGCCTCCTCAAGACCCGTCCGTGGTTGGCGTCGTTGATCCTCCACCCTCCCCTGTTCCGACTGCAAAAGCATCTCAAGCACCTCCAAGAAGTCCACCTTCTCCAATATCTGAGAAAGATCCCTCTACTCCCGTGGATCAAAGCGCCATTCAGGCACCTAATACACCCGAGGAGACTCAACCATCTACACCGACGAATCCTCTTCCTCCATCAGAAAATCCAGTTGTGATTCCTTCACCAGGTGCAAACCCAGCAACGGGAAAACAAACTCCAAGTTCACCTGATCAAGGAACAATAACTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAGCCACATCCACTAGCACTCCAAACAACTCACCTCATTCCTCCGACTCAACGCCAGTGAAATCACCATTAGGACAGTCCAATGCACCATCAACTGGTTTACGTAGTCACACTGATGTTGCAGTCGGTGCTGCAGTTGCTGGAGTTTTTGTAATCGCTTTGTTTGCTGTGATTTTTGTGTTCTCAAGGAAGAAGAAAAGACGGGGAAAGATGTACACCGGCCCCTACATGCCTCCAAAAAACTTTTGTGTGAAAGCAGATGGAAATTACTATCCACAAGAACACGGGGGCAACTCTGGTTCTTCTGAAGGCTTCTACACTCAAGTCCCACATACTCCCCTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATACAGTGGCAGTGGAATGGAGTCAAGTGTGATAAACAGTGCCAAGTTCTACTTTAGCTATGAAGAATTAATGGAGGTTACATCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTATCAGGGTTGGCTTCCAGAAGGGAAGACTGTGGCTGTGAAGCAACTCAAGGCGGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATCATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCGCCGAGCGTCATAGATTGCTCATCTATGAGTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCACGGTAAAGGAGTACCCGTGCTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGATCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATCCACCGAGACATCAAATCAGCCAACATTTTGCTGGACGACGCTTTTGAGGCGCAGGTTGCAGATTTTGGACTTGCGAAACTGACAAACGATACAAATACCCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCTCCCGAGTATGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATAACAGGTCGTAAGCCTGTTGATTCCACTCAGCCCCTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCTCACCTTCTGCACGCCCTTGAAACTGGGGAGTTTGACGGATTAGTAGATCCACGCCTTGGAAAACAGTATGTGGAAAGCGAAATGTTCAGAATGATCGAAGCGGCAGCTGCCTGCGTTCGTCATTCGGCTCCTAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCAATAGACATTGAAAGTGACATGTCTGACCTCTCCAATGGTGTCAAATATGGGCAAAGCACCATATATGATTCTGGGCAATACAATCAAGATATTTCTAGATTCAGAAGAATGGCACTCGGTACAGACAGCTTCGACTACGACAGTTACAGTAGTGAATACAATTCCGGAGAAATGAATGCAAGTCGTGCATCGTGGAGATTCCAGAATAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGAGGATCTGTGACACCACAAAATCACCCTGGCGGTAGACAATTCTAA 2337 48.18 MSSSNDTSSPSSDSVSDSSLPPEASDSSPPPPPSPSSDSSSPPPSPSTPPSPVPDDISSLTLNQSNGPSPSTFPSAIKAPPIDGESSPSSSPPAPPNPGTTPPAPTGGSDSNDSDETPSPPPEDSASPPLSPPPSPRPPPPSPPPPQDPSVVGVVDPPPSPVPTAKASQAPPRSPPSPISEKDPSTPVDQSAIQAPNTPEETQPSTPTNPLPPSENPVVIPSPGANPATGKQTPSSPDQGTITTPTSESNILSPPTATSTSTPNNSPHSSDSTPVKSPLGQSNAPSTGLRSHTDVAVGAAVAGVFVIALFAVIFVFSRKKKRRGKMYTGPYMPPKNFCVKADGNYYPQEHGGNSGSSEGFYTQVPHTPLGNSFGSQKGTGYSGSGMESSVINSAKFYFSYEELMEVTSGFSRQNILGEGGFGCVYQGWLPEGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVAERHRLLIYEFVPNKTLEHHLHGKGVPVLDWSKRLKIALGSAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDSTQPLGDESLVEWARPHLLHALETGEFDGLVDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRAIDIESDMSDLSNGVKYGQSTIYDSGQYNQDISRFRRMALGTDSFDYDSYSSEYNSGEMNASRASWRFQNNSSGESETQAFKGGSVTPQNHPGGRQF* 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25732365 25736163 - CsaV3_5G031550.1 Csa05g02336 530723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02336 778 MobiDBLite consensus disorder prediction 86 103 - -
Csa05g02336 778 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Csa05g02336 778 MobiDBLite consensus disorder prediction 226 289 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 183 202 - -
Csa05g02336 778 ProSiteProfiles Protein kinase domain profile. 410 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02336 778 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Csa05g02336 778 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 126 750 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 104 120 - -
Csa05g02336 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Csa05g02336 778 Gene3D Phosphorylase Kinase; domain 1 376 485 - -
Csa05g02336 778 CDD STKc_IRAK 416 681 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 203 220 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 121 182 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 24 53 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 1 289 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 1 23 - -
Csa05g02336 778 MobiDBLite consensus disorder prediction 750 778 - -
Csa05g02336 778 Gene3D Transferase(Phosphotransferase) domain 1 486 699 - -
Csa05g02336 778 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 126 750 - -
Csa05g02336 778 SMART serkin_6 410 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02336 778 Pfam Protein tyrosine and serine/threonine kinase 413 614 IPR001245 GO:0004672|GO:0006468
Csa05g02336 778 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00511 Csa-Chr4:3365923 Csa05g02336 Csa-Chr5:25732365 2.21E-162 dispersed
Csa05g02336 Csa-Chr5:25732365 Csa01g02931 Csa-Chr1:25716837 2.19E-91 dispersed
Csa05g02558 Csa-Chr5:26969429 Csa05g02336 Csa-Chr5:25732365 1.85E-166 dispersed
Csa06g01929 Csa-Chr6:17387432 Csa05g02336 Csa-Chr5:25732365 1.09E-76 dispersed
Csa05g02336 Csa-Chr5:25732365 Csa05g03083 Csa-Chr5:30852236 1.16E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78272 PF07714 PK_Tyr_Ser-Thr 3.20E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02336 - - csv:101215732 1251.11