Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02342 ATGATTAGGACACCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTCCCAGGAATGCCACGACCTCCTATTCCTGGGATTCCGGGTGTTCGCCCAATCATTCCTCCTGTGGTTAGGCCTGCTATTCTTCCAAGTATTACACCAGCTGAGAAACCACAAACTACTATTTATATTGGTCGAATTGCTCAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAGATCCTTCGGATGGAACTCCTAGAACTTTTGGATTCTGCGAGTTTGAATCTGCTGAAGGTGTTCTTCGCGCTCTACGATTACTGACAAAGTTAAACATTGATGGACAAGAACTAGGGCTAAAGGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAACTCGAAGAAACTGAAAGAAACACAAGCTTCGGAGACTAAGGAAGAAGAAACAGACACAACAAATGTGGCTAAAAAAGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATCATGATTCAGGGGAAAAAGATTTTGATATTGCCTGTTCTGCAGTCTTAAGTGATGAAGATAGAGATGCGGATCGTGAGGCAAAAGAAAAGCTTACAAATGCACTGGAGGAGAGGATGAAGTCTAGACCTCTTCCACCACCTCCTCTACTGACAACCACTGATGTCTCTGATAATTCAAGTGTGGAACCATCTGCTAAACCCAAAGATGGTGAAGCTGATGGTGATACTTCGAAACCCGATGCAGCTGATGATAGAAATGATGAGGACACAACCAGTGATCATAAACAAGCTAGTGAGCACGACAAGCCTGAAACAAGCTCACCTGAAAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGAGGGATCTGAAAAGGGATAAGGAACGGGAAATTGAGAGATATGAAAGAGAGACAGAACGGGAGCGAGCTAGGAAAGAAAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTACGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGGGAGAGAGAGAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTACGATGAAGATGATGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAGGATGATTCATTCGATAGACAAAGAGAGGAGGAAGAAATTGCAGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACTGAGAGATCCACCTAAACTTCTACCTAGCCAGACAATTAGTGTCAGTGAGAAAACAGTTACCGCTGAAGAATCCACCATTGAGATTAAAGTTGTGGCTTCTGAACGTGAATCTGAGATTGACTCTAGCTGTGATAACCATATAGGAGATGGAATCTTACAAAATGGTAGTGGTGATGAATTAAATACGATACCATCAGAGACTCGACAGAGTGGAGGGTTGCCTGGCAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAGCGGACTGCTGTTCCTTCAGTTTTTCATGAGGAGGAGGATGATGAAGCACATAAAGAGAAGAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTTCAGGCTGTGCAACCTCCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCCGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTCCTAGTGAAAAGTCAGGTCATCGGGACCGAAATGACGAGGATACCCATCGCAGCAAAGATGAGAACAAAGCAACAGACAGAGATAGGGAGCGGGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAGCTTTTGGATGCAAAACAGTTGATTGATATGATTCCGAAGACTAAGGAGGAGTTATTCTCATATGATATTAATTGGGCTATTTATGAAAAGCATGCGCTACATGAGAGAATGAGACCGTGGATATCAAAAAAGATAACAGAGTTTTTGGGGGAAGAAGAAACGACTCTTGTGGATTACATAGTTTCAAGTACTCAAGAACACGTGAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTAATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 2313 43.67 MIRTPFPPRPPGAMGMVPGMPRPPIPGIPGVRPIIPPVVRPAILPSITPAEKPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELGLKGTQATRDYLKRYVEKKAENSKKLKETQASETKEEETDTTNVAKKETSKPSAEDSKEDHDSGEKDFDIACSAVLSDEDRDADREAKEKLTNALEERMKSRPLPPPPLLTTTDVSDNSSVEPSAKPKDGEADGDTSKPDAADDRNDEDTTSDHKQASEHDKPETSSPERSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSFDRQREEEEIAEAKRKAEEEQLQKLRDPPKLLPSQTISVSEKTVTAEESTIEIKVVASERESEIDSSCDNHIGDGILQNGSGDELNTIPSETRQSGGLPGKRLGFGLVGSGKRTAVPSVFHEEEDDEAHKEKKMRPLVPIDYSAEELQAVQPPSTGALPPNLAAAAEFAKRISNVNSKEEKPDSERERGRRPSEKSGHRDRNDEDTHRSKDENKATDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA* 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25772700 25779090 + CsaV3_5G031610.1 Csa05g02342 530729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02342 770 MobiDBLite consensus disorder prediction 250 348 - -
Csa05g02342 770 MobiDBLite consensus disorder prediction 148 223 - -
Csa05g02342 770 SMART pwi_2 686 759 IPR002483 GO:0006397
Csa05g02342 770 MobiDBLite consensus disorder prediction 360 560 - -
Csa05g02342 770 MobiDBLite consensus disorder prediction 360 447 - -
Csa05g02342 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 140 IPR000504 GO:0003723
Csa05g02342 770 Coils Coil 143 163 - -
Csa05g02342 770 Coils Coil 417 444 - -
Csa05g02342 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Csa05g02342 770 Coils Coil 360 387 - -
Csa05g02342 770 MobiDBLite consensus disorder prediction 501 515 - -
Csa05g02342 770 MobiDBLite consensus disorder prediction 474 489 - -
Csa05g02342 770 CDD RRM_RBM25 55 138 IPR034268 -
Csa05g02342 770 ProSiteProfiles PWI domain profile. 673 770 IPR002483 GO:0006397
Csa05g02342 770 MobiDBLite consensus disorder prediction 594 649 - -
Csa05g02342 770 Gene3D PWI domain 649 765 - -
Csa05g02342 770 Pfam PWI domain 693 756 IPR002483 GO:0006397
Csa05g02342 770 SUPERFAMILY RNA-binding domain, RBD 15 126 IPR035979 GO:0003676
Csa05g02342 770 Gene3D - 47 174 IPR012677 -
Csa05g02342 770 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 769 - -
Csa05g02342 770 SMART rrm1_1 56 129 IPR000504 GO:0003723
Csa05g02342 770 MobiDBLite consensus disorder prediction 538 560 - -
Csa05g02342 770 SUPERFAMILY PWI domain 690 758 IPR036483 GO:0006397
Csa05g02342 770 Coils Coil 307 356 - -
Csa05g02342 770 MobiDBLite consensus disorder prediction 148 348 - -
Csa05g02342 770 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02342 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1237.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47