Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02348 ATGGCTGCGGAACTCTCCCTCGGCTCGGCAGCGAGCAAACCCCAGACTGAGAATGGGGTTTCTGATTCTATTTCATCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTATCAGGACGTTTTGGTGTTTCAGTCATCAACTTATGGGAAAGTTCTGGTTTTGGATGGGGTGATTCAGCTTACAGAGAGAGATGAATGTGCTTATCAAGAGATGATCACTCACCTTCCGCTTTGCTCAATTCCAAATCCCAAAAAGGTTCTAGTCATTGGTGGAGGGGACGGCGGTGTGTTGCGAGAGGTGGCTCGTCATTTATCCGTTGAGCAGATAGATATCTGTGAAATCGACAAGATGGTAGTTGACGTTTCCAAAGAATTTTTCCCTCGTGTAGCTATTGGGTACGAGGATCCCCGTGTCACTCTTCATGTTGGCGATGGTGTTGCATTTCTCAAGGCTGTTCCTGAAGGCACTTATGATGCAATTATAGTGGATTCATCTGATCCTATCGGGCCTGCACAAGAGCTTTTTGAGAAGCCATTTTTTGCTTCAGTTGCCAAAGCTCTTCGACCAGGAGGTGTTGTGTGTACTCAGGCAGAGAGCATCTGGCTTCACATGCATATCATTGAAGACATTGTAACAAACTGCCGCCAGATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCCACATATCCAAGCGGAGTGATTGGGTTTATGCTCTGCTCAACTGAGGGACCTACTGTCGATTTCAAGCATCCAGTAAACTCAGTCGAGGTGAACGGCATTGACACCGCAAAGAGTCCGCTCAAGTTTTACAACTCGGAGATTCATGCAGCAGCTTTCTGTTTGCCATCTTTTGCGAAGAAGATTATTGATTCAAAATGA 954 45.91 MAAELSLGSAASKPQTENGVSDSISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQDVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHLSVEQIDICEIDKMVVDVSKEFFPRVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFKHPVNSVEVNGIDTAKSPLKFYNSEIHAAAFCLPSFAKKIIDSK* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25799234 25802192 + CsaV3_5G031670.1 Csa05g02348 530735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02348 317 CDD AdoMet_MTases 107 218 - -
Csa05g02348 317 Pfam Spermine/spermidine synthase domain 87 274 - -
Csa05g02348 317 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 108 121 IPR030373 -
Csa05g02348 317 Pfam Spermidine synthase tetramerisation domain 30 84 IPR035246 -
Csa05g02348 317 TIGRFAM speE: spermidine synthase 31 309 IPR001045 GO:0003824
Csa05g02348 317 PANTHER SPERMIDINE/SPERMINE SYNTHASE 16 317 IPR001045 GO:0003824
Csa05g02348 317 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 16 317 - -
Csa05g02348 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 315 IPR029063 -
Csa05g02348 317 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g02348 317 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 266 IPR030374 -
Csa05g02348 317 PIRSF Spermidine_synth 20 317 IPR030668 GO:0006595
Csa05g02348 317 Hamap Polyamine aminopropyltransferase [speE]. 30 315 IPR001045 GO:0003824
Csa05g02348 317 Gene3D Vaccinia Virus protein VP39 82 317 IPR029063 -
Csa05g02348 317 Gene3D Spermidine synthase, tetramerisation domain 23 81 IPR037163 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02348 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00837 Csa-Chr1:5250854 Csa05g02348 Csa-Chr5:25799234 5.86E-91 transposed
Csa02g00026 Csa-Chr2:277149 Csa05g02348 Csa-Chr5:25799234 7.48E-35 transposed
Csa03g01341 Csa-Chr3:10126521 Csa05g02348 Csa-Chr5:25799234 2.21E-37 transposed
Csa03g02593 Csa-Chr3:24466440 Csa05g02348 Csa-Chr5:25799234 1.89E-155 transposed
Csa05g00058 Csa-Chr5:286728 Csa05g02348 Csa-Chr5:25799234 2.90E-160 transposed
Csa06g02008 Csa-Chr6:18092867 Csa05g02348 Csa-Chr5:25799234 4.52E-34 transposed
Csa01g00162 Csa-Chr1:1051117 Csa05g02348 Csa-Chr5:25799234 1.97E-148 wgd
Csa01g00836 Csa-Chr1:5250476 Csa05g02348 Csa-Chr5:25799234 3.53E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106