Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02351 ATGGCATCAAGATCTACCGCTAACTTTTTGGACTTGGCTTCTGGAGATTTACTGGATGTTCCTCGTACACCCAGGTCCCTGCCACGAGTTATGACTGCTCCTGGAATTATTTCTGAATTGGATGATTATGGGAGTAATGACGGAGACTCGGAGTCTTCATCTGTATACCGTGAGCGCAAAATCATAGTTGCAAATATGTTACCTGTGCACGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGATGAGGATTCAATTTTATTGCAGCTAAAGAATGGGTTTTCACCTGAAATGGAGGTTATATACATTGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAGCAGGAGGAGGTTGCTCAGAAACTGTTCGACAATTTTAACTGTGTACCTACATTTCTTCCTCATGATCTCCAGAAGAACTTTTATATTGGGTTTTGCAAACAGCAGCTATGGCCCTTATTTCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCAGCTCTGGCAAGCCTATGTTTCTGCTAATAAACTATTTGCTGATAAGGTGATGGAAATCATCAATCCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCTACATTCCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTCCTGCATAGCCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGTCTGTTAAACTGTGATTTACTTGGTTTTCATACGTTTGATTATGCCCGTCACTTCCTCTCATGCTGTAGCAGAATGTTGGGCTTGGATTATGAATCGAAGCGTGGTCATATTGGACTAGATTATTATGGTCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGCCGGCTGGAATCAGTGATGAATCTTCCATCTACATTTGCTAAAGTAAAAGAAATTCGAGATCAGTTCATGGGGAAGAAATTAATTCTTGGTATTGATGATATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTTGCTGTGGAACAGCTTTTACGGCATCATCCTGCGTTGCGGGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGATGTGCATGAAGCTCAGAAGGAAGCCTACTTGGCTGCTGAAAGGATCAATGAAGCTTACGGTTCAAGTAACTACAAACCAGTAATTCTGATTGATCGCCACGTCCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCTCCTCGAACGAGTATGCTTGTGGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCAATCAGGGTTAATCCTTGGGACATTGATGCTGTTGCCGATGCATTGGAACTAGCCATAACCATGCAGGAGTCAGAGAAGCAGCTGCGACATGAGAAACATTATCGATATGTCAGTTCCCACGATATTGGATATTGGTCTCGTAGTTTTATGCAAGATTTGGATAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGTTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACCATCGATCACATTGTCTCGGCTTATAAAAGAACTCATAGAAGAGCAATATTTTTAGATTATGATGGCACTATCATTTCACAAAGCTCTATAATTAAGACACCGAGCCCTGAAGTTATCTCAGTCTTGACTACTCTTTGCAACGATCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTCAGTGGTTTGTCTCTTGTGAGATGTTGGGGATTGCAGCGGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACTAGTCCACTGTCTTCTGATCTTGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACGGAAGCAACAGATGGCTCGTGCATAGAACAGAAAGAAAGTGCTTTAGTCTGGCACCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGAGGCCAGCATATTGTTGAAGTGAAACCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCAAGAATGGTGGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGTACCGTCTCCAGTCCTTCACTCCCTTCCGCTCCAGAAATCTTCGCCTGTACTGTTGGACGAAAGCCAAGCAAGGCTAAGTTTTACCTCGATGATACTTCCGACGTCGTTAAATTGCTGCAATGCCTTGCCTCGTCGTCACGTCCAAGACCCCGACAACTACCACAGATGCGTGTTTCTTTCGAGAGTGTTTTCTAA 2583 43.21 MASRSTANFLDLASGDLLDVPRTPRSLPRVMTAPGIISELDDYGSNDGDSESSSVYRERKIIVANMLPVHAKKDGQSGKWCFSLDEDSILLQLKNGFSPEMEVIYIGSLKVEIDASEQEEVAQKLFDNFNCVPTFLPHDLQKNFYIGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLLGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVKEIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRHHPALRGKIVLVQIVNPARGSGKDVHEAQKEAYLAAERINEAYGSSNYKPVILIDRHVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLDRACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGQWFVSCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIEQKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSRPRPRQLPQMRVSFESVF* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25831660 25837480 + CsaV3_5G031700.1 Csa05g02351 530738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02351 860 Gene3D - 590 717 IPR023214 -
Csa05g02351 860 Gene3D - 719 848 IPR023214 -
Csa05g02351 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Csa05g02351 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Csa05g02351 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Csa05g02351 860 CDD HAD_TPP 592 833 - -
Csa05g02351 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Csa05g02351 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Csa05g02351 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Csa05g02351 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
Csa05g02351 860 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02351 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101212688 1746.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02351 Csa-Chr5:25831660 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa01g00164 Csa-Chr1:1067140 Csa05g02351 Csa-Chr5:25831660 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g745 . . . . . Bpe10g00831 Bma14g01784 Bma15g00201 . . . . . . . . Cpe01g01518 . . . . . . . Cla05g02526 Cam05g2715 Cec05g2747 Cco05g2787 Clacu05g2718 Cmu05g2572 Cre05g2685 Cone13ag1029 Cone19ag1019 . . Lsi04g00531 Csa05g02351 Chy10g00918 Cme10g00508 Blo06g00869 Blo11g00904 Bda07g01593 . . . . . . . . Cma04g01714 . Car04g01747 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa04g02256 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 3.8e-194 675.2
Csa01g02281 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.7 1.1e-190 663.7
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91