Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02351 ATGGCATCAAGATCTACCGCTAACTTTTTGGACTTGGCTTCTGGAGATTTACTGGATGTTCCTCGTACACCCAGGTCCCTGCCACGAGTTATGACTGCTCCTGGAATTATTTCTGAATTGGATGATTATGGGAGTAATGACGGAGACTCGGAGTCTTCATCTGTATACCGTGAGCGCAAAATCATAGTTGCAAATATGTTACCTGTGCACGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGATGAGGATTCAATTTTATTGCAGCTAAAGAATGGGTTTTCACCTGAAATGGAGGTTATATACATTGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAGCAGGAGGAGGTTGCTCAGAAACTGTTCGACAATTTTAACTGTGTACCTACATTTCTTCCTCATGATCTCCAGAAGAACTTTTATATTGGGTTTTGCAAACAGCAGCTATGGCCCTTATTTCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCAGCTCTGGCAAGCCTATGTTTCTGCTAATAAACTATTTGCTGATAAGGTGATGGAAATCATCAATCCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCTACATTCCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTCCTGCATAGCCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGTCTGTTAAACTGTGATTTACTTGGTTTTCATACGTTTGATTATGCCCGTCACTTCCTCTCATGCTGTAGCAGAATGTTGGGCTTGGATTATGAATCGAAGCGTGGTCATATTGGACTAGATTATTATGGTCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGCCGGCTGGAATCAGTGATGAATCTTCCATCTACATTTGCTAAAGTAAAAGAAATTCGAGATCAGTTCATGGGGAAGAAATTAATTCTTGGTATTGATGATATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTTGCTGTGGAACAGCTTTTACGGCATCATCCTGCGTTGCGGGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGATGTGCATGAAGCTCAGAAGGAAGCCTACTTGGCTGCTGAAAGGATCAATGAAGCTTACGGTTCAAGTAACTACAAACCAGTAATTCTGATTGATCGCCACGTCCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCTCCTCGAACGAGTATGCTTGTGGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCAATCAGGGTTAATCCTTGGGACATTGATGCTGTTGCCGATGCATTGGAACTAGCCATAACCATGCAGGAGTCAGAGAAGCAGCTGCGACATGAGAAACATTATCGATATGTCAGTTCCCACGATATTGGATATTGGTCTCGTAGTTTTATGCAAGATTTGGATAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGTTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACCATCGATCACATTGTCTCGGCTTATAAAAGAACTCATAGAAGAGCAATATTTTTAGATTATGATGGCACTATCATTTCACAAAGCTCTATAATTAAGACACCGAGCCCTGAAGTTATCTCAGTCTTGACTACTCTTTGCAACGATCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTCAGTGGTTTGTCTCTTGTGAGATGTTGGGGATTGCAGCGGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACTAGTCCACTGTCTTCTGATCTTGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACGGAAGCAACAGATGGCTCGTGCATAGAACAGAAAGAAAGTGCTTTAGTCTGGCACCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGAGGCCAGCATATTGTTGAAGTGAAACCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCAAGAATGGTGGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGTACCGTCTCCAGTCCTTCACTCCCTTCCGCTCCAGAAATCTTCGCCTGTACTGTTGGACGAAAGCCAAGCAAGGCTAAGTTTTACCTCGATGATACTTCCGACGTCGTTAAATTGCTGCAATGCCTTGCCTCGTCGTCACGTCCAAGACCCCGACAACTACCACAGATGCGTGTTTCTTTCGAGAGTGTTTTCTAA 2583 43.21 MASRSTANFLDLASGDLLDVPRTPRSLPRVMTAPGIISELDDYGSNDGDSESSSVYRERKIIVANMLPVHAKKDGQSGKWCFSLDEDSILLQLKNGFSPEMEVIYIGSLKVEIDASEQEEVAQKLFDNFNCVPTFLPHDLQKNFYIGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLLGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVKEIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRHHPALRGKIVLVQIVNPARGSGKDVHEAQKEAYLAAERINEAYGSSNYKPVILIDRHVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLDRACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGQWFVSCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIEQKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSRPRPRQLPQMRVSFESVF* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25831660 25837480 + CsaV3_5G031700.1 Csa05g02351 530738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02351 860 Gene3D - 590 717 IPR023214 -
Csa05g02351 860 Gene3D - 719 848 IPR023214 -
Csa05g02351 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Csa05g02351 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Csa05g02351 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Csa05g02351 860 CDD HAD_TPP 592 833 - -
Csa05g02351 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Csa05g02351 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Csa05g02351 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Csa05g02351 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Csa05g02351 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
Csa05g02351 860 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02351 Csa-Chr5:25831660 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa01g00164 Csa-Chr1:1067140 Csa05g02351 Csa-Chr5:25831660 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02351 K16055 - csv:101212688 1746.48