Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02366 ATGTCCGTATCCATTTCCAACTGCTTCTCTAATTTACTCTGCCAGGAAGATTCTTCCGGCGTCTTCTCCGGCGAGTCCCCGGGGTGTTCTTCCGACCTCGAGTCTCCAGCCTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTTCCCGATTACGACTGTTTCTCGCGCTTCCAATCTCCGTCGCTTGATGCCGCCGCTAGACTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCATATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTATTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAATCAAATGGATGGCCATTGCAACTTCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCACTTGTTCCTGCATTACTAGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTATTGGTCCTGAGGGTATTAGATTGGCGGCTACGTTCGGTAACACCGTTCAATTTCATAGCATTCTTTGCCTACAAGCTTGACCCATCTGGGGATTTCATTGAGTTTCTTATCTCAAGAGCAACAGAGATTATACTGTCACATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCTTGTATTGCGGCGGCTGCTTTGCTTTGTGCTGCAAATGAAGTCCAGAGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAATGGTCTAAGGAAAGAAAATATCATGGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAATACCCGAAGAAAGTCTCCCAAAATCTTACCTCAGTATAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCTTCTTCCTACTCTTCTTCTTCTTCCTCATCTTCATCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTACATGATGATAAGGGTAACAACACTGAAGAATGA 1008 44.84 MSVSISNCFSNLLCQEDSSGVFSGESPGCSSDLESPACVEESISVFIKNERHFVPDYDCFSRFQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQSNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFAYKLDPSGDFIEFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVQSLSVVNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILPQYRVTVRTRMRSSDLSSSYSSSSSSSSSSPNKRRKLNQTHLWVHDDKGNNTEE* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25920091 25922586 - CsaV3_5G031850.1 Csa05g02366 530753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02366 335 Gene3D - 56 173 - -
Csa05g02366 335 SMART cyclin_7 78 166 IPR013763 -
Csa05g02366 335 PANTHER CYCLINS 22 320 IPR039361 -
Csa05g02366 335 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Csa05g02366 335 Gene3D - 46 238 - -
Csa05g02366 335 CDD CYCLIN 73 165 IPR013763 -
Csa05g02366 335 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Csa05g02366 335 MobiDBLite consensus disorder prediction 320 335 - -
Csa05g02366 335 Pfam Cyclin, C-terminal domain 175 288 IPR004367 -
Csa05g02366 335 SUPERFAMILY Cyclin-like 157 276 IPR036915 -
Csa05g02366 335 SMART Cyclin_C_2 175 312 IPR004367 -
Csa05g02366 335 MobiDBLite consensus disorder prediction 295 318 - -
Csa05g02366 335 PANTHER CYCLIN-D1-1 22 320 - -
Csa05g02366 335 MobiDBLite consensus disorder prediction 295 335 - -
Csa05g02366 335 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01752 Csa-Chr5:20838859 Csa05g02366 Csa-Chr5:25920091 6.08E-155 dispersed
Csa05g02366 Csa-Chr5:25920091 Csa06g03126 Csa-Chr6:26701732 1.84E-52 dispersed
Csa05g02366 Csa-Chr5:25920091 Csa02g02191 Csa-Chr2:19704671 2.23E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02366 K18810 - csv:101209417 641.728