Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02371 ATGAATGAAATGGTTGATCCAGAATCAAATGGGCAAACTGTTCATGAATGGAGTACAAATAGAAGATTTGTTTTTCAGTTTACTACAACGTCTTCTTCTTCCTTACCCATAATGGAGTTTTTGTACATATTATTTTTCATCTCCATTTTTCTCCCTCTAACCTTTTCTCTCAACCTTGAATCTCCTGATCTTCATGGAACCACTTCCATTTCCCTTCCTACCAATCATACTTCTTCACTCACACACCAAATTATCGACCTCGCCAATCATCCCACCGCTGTTAATTGGATGAAGACCATAAGGAGAAAAATTCACGAGAACCCAGAACTTGCTTTTGAAGAATTTGAAACCAGTAGGCTTATTAGACAGGAACTTGACAATCTTCGTGTTTCTTATCGATGGCCGGTCGCTGGTACCGGTGTTGTGGCTTTCGTTGGCTCTGGTTCTCCTCCCTTTGTCGCTCTAAGAGCTGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAACATAAGAGCAAAGTTGAGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTCCTTGGTGCTACTAAAATTCTGAATCAACTGCGACATAAATTACAGGGCACTGTTGTTCTTGTATTTCAGCCAGCGGAGGAGAAAGGAGGAGGAGCAAAAGACATGATAAATGAAGGTGCGCTTGATGGTGTAGAAGCTATATTTGGACTGCACGTCGTGCATGAATATCCAGTGGGCGTTGTCGCTTCACGCCCCGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCAGCAATTCCACAGGATTCAATTGATCCTATTTTAGCAGCTTCGGCAGCAATTATAAGTTTGCAAAGCATAGTTTCAAGAGAGATAGACCCTTTAGATTCTCAGGTGGTTTCTGTGGCCATGGTTCAAGCAGGAACTGCACTCAATGTCATCCCGGAGTCCGCGACTATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCAATGCCCTAAGAGACAGGATAGAAGAGGTCATTAACGGGCAGGCTGTGGTGCATCGGTGCACGGCGGAGATTGATTTCCTAGGCAAGGAACACCCAACAATTCCTCCGATGGTAAACGACGAGAAAATATATGAACATGTTCGACGTGTCTCTATGGAAATTGTAGGAAAAGAAAAAACAAAAGTATCTCCACGCCTCATGGGAAGTGAAGATTTTGCTTTCTTTGCAGACAAAGTGCCAGGATCTTTCTTATTTCTTGGCACATATAACGAGAGAATCGGAGCTATACATCCTCCACACAGCCCTCGCTATAAAATTGATGAAAATGTGCTTCCACTTGGCGCAGCAATTCATGCAGCAGTGGCATATTCATATCTCTTGAATTCATCATCAACATCTCATTCTTTCTTTGACCACTGA 1458 43.35 MNEMVDPESNGQTVHEWSTNRRFVFQFTTTSSSSLPIMEFLYILFFISIFLPLTFSLNLESPDLHGTTSISLPTNHTSSLTHQIIDLANHPTAVNWMKTIRRKIHENPELAFEEFETSRLIRQELDNLRVSYRWPVAGTGVVAFVGSGSPPFVALRADMDALPIEELVEWEHKSKVEGKMHACSHDAHVAMLLGATKILNQLRHKLQGTVVLVFQPAEEKGGGAKDMINEGALDGVEAIFGLHVVHEYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAAIPQDSIDPILAASAAIISLQSIVSREIDPLDSQVVSVAMVQAGTALNVIPESATIAGTFRAFSKKSFNALRDRIEEVINGQAVVHRCTAEIDFLGKEHPTIPPMVNDEKIYEHVRRVSMEIVGKEKTKVSPRLMGSEDFAFFADKVPGSFLFLGTYNERIGAIHPPHSPRYKIDENVLPLGAAIHAAVAYSYLLNSSSTSHSFFDH* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25946033 25948949 - CsaV3_5G031900.1 Csa05g02371 530758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02371 485 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 42 480 - -
Csa05g02371 485 CDD M20_IAA_Hyd 97 472 IPR044757 GO:0009850|GO:0016787
Csa05g02371 485 SUPERFAMILY Zn-dependent exopeptidases 94 474 - -
Csa05g02371 485 Gene3D Zn peptidases 99 457 - -
Csa05g02371 485 SUPERFAMILY Bacterial exopeptidase dimerisation domain 263 372 IPR036264 -
Csa05g02371 485 PANTHER PEPTIDASE M20 FAMILY MEMBER 42 480 IPR017439 GO:0016787
Csa05g02371 485 Pfam Peptidase dimerisation domain 263 361 IPR011650 -
Csa05g02371 485 Gene3D - 262 380 - -
Csa05g02371 485 Pfam Peptidase family M20/M25/M40 154 467 IPR002933 GO:0016787
Csa05g02371 485 TIGRFAM amidohydrolases: amidohydrolase 98 460 IPR017439 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02371 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - csv:101208682 875.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04102 Csa-Chr3:35969451 Csa05g02371 Csa-Chr5:25946033 6.53E-178 dispersed
Csa03g04621 Csa-Chr3:40144785 Csa05g02371 Csa-Chr5:25946033 3.66E-06 dispersed
Csa05g02371 Csa-Chr5:25946033 Csa06g02152 Csa-Chr6:19256669 7.03E-172 dispersed
Csa05g02371 Csa-Chr5:25946033 Csa03g03454 Csa-Chr3:31021558 6.73E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30