Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02375 ATGGCCAGAAACCACATCTTCTCCCGTCGCCGGAGGTCCGATCAGCTTGATGGTTTAGATCGTTTTCCCACCTCTGATTCTGAAGTACATGTTCTCGCCGTCGATGACAGCCTTGTCGACCGTACAGTAATTGAACGCCTCCTTCGTCTTACTGCCTGTCGAGTCACTGCAGTTGATAGTGGAATTAGAGCTTTACAATATCTTGGATTGCAAGATGAGACTAATTCCCAAGTTGGGTTTGATGGGTTGAAGGTTGATATGATCATAACAGATTACTGTATGCCCGGAATGACAGGATACGAATTGCTTAAGAAAATTAAGGAATCATCAACTTTGAGAGAGATTCCGGTGGTAATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTGGAGGAAGGAGCAGAAGATTTCATAGTGAAGCCGGTGAAACTATCTGATGTGAAACGGCTCAGAGAATATATGGTGGGGGATGAAAAGACTGGAAATGAAAGAAGTGGGATCAATAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCATCATCACCGTCCATTTCATCACCAGCATCATCGGATTCCTCTCCATCATCTCCATCACCTTCATCATCACCGTCGGATTCGCTTCAGTCCACCCCATCATCATCAGAACCGTCATCTCCAATGTCCACTCCGCAATCGAACGCCTCTAAATGA 702 45.87 MARNHIFSRRRRSDQLDGLDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGNERSGINKRKLREPCDQPSSSPSISSPASSDSSPSSPSPSSSPSDSLQSTPSSSEPSSPMSTPQSNASK* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25975705 25978357 + CsaV3_5G031940.1 Csa05g02375 530762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02375 233 MobiDBLite consensus disorder prediction 162 179 - -
Csa05g02375 233 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Csa05g02375 233 SUPERFAMILY CheY-like 29 155 IPR011006 -
Csa05g02375 233 SMART REC_2 29 154 IPR001789 GO:0000160
Csa05g02375 233 CDD REC_typeA_ARR 31 153 - -
Csa05g02375 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 224 IPR045279 GO:0009736
Csa05g02375 233 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Csa05g02375 233 Gene3D - 29 188 - -
Csa05g02375 233 MobiDBLite consensus disorder prediction 180 233 - -
Csa05g02375 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 12 224 - -
Csa05g02375 233 MobiDBLite consensus disorder prediction 162 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02375 Csa-Chr5:25975705 Csa05g02855 Csa-Chr5:28884165 1.48E-48 dispersed
Csa03g03727 Csa-Chr3:33106666 Csa05g02375 Csa-Chr5:25975705 2.47E-54 transposed
Csa04g01951 Csa-Chr4:19429525 Csa05g02375 Csa-Chr5:25975705 1.80E-53 transposed
Csa05g00905 Csa-Chr5:7009852 Csa05g02375 Csa-Chr5:25975705 4.06E-53 transposed
Csa05g01629 Csa-Chr5:19338596 Csa05g02375 Csa-Chr5:25975705 5.33E-56 transposed
Csa06g02147 Csa-Chr6:19229914 Csa05g02375 Csa-Chr5:25975705 4.98E-46 transposed
Csa01g00186 Csa-Chr1:1207077 Csa05g02375 Csa-Chr5:25975705 3.05E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31816 PF00072 Response_reg 2.10E-21 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02375 K14492 - csv:101209506 378.637