Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02385 ATGAACGTCTCTCGCACGTGCTCCCTCTGCGGGAACAACGGCCACAACTCCCGCACCTGCCCGGAAGCCGACGGCACCACCGGATTCATGCTGTTCGGAGTTAGACTAACCACGACGTCAGATGGAAGTAACTCCTTTAGGAAGAGCTTTAGTATGAATAATCTCTCACAATACGCAGACCATCCTCCAAGTCAAGACTCCAACCACGCTGATGCCGGATATGCTTCCGACGACGTCGTTCACCCGTCGGACCGTTCCGGCGGCCGGAAGAGAGGGATTCCGTGGACGGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAAGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTTGCAAGTCATGCTCAGAAATATTTTCTCCGACGGAATAATTTTAATCGGCGACGCCGTAGATCCAGTCTTTTCGATATCACTACTCACACCTTCACGAGCTCATCCAAGGAAGACGATTTGATATTTTCCGGTCACGAGGCAACGCAGCCACCGCTGCCACCATCAACACCCCAAAAAGACAACACTCCAGGGAATTTCTCGGTGAAAATTCATCAAGCGAAACCACCTCCAGCCGCGGTGGCCAGCGGCGTCGTTGATAGCAAAGCCGTCGAGAGTACATTAACACTAAATTCATCAAATTATCCGGCAAAGCCATGCAATTCCAAAATCATTCGTCCAATTCCAATGCTTCCTCTATCACCATACCCCAAATTTGCGGAATTAAATATTAACGAGAGAATCCCAGAAGACCCTTTGCCTCTAACTTTAAAGCTCTCAACTTCACAGTCGGAGGGACAGTCACCGGCGGCTGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGTATAGACATTGTCAGTGTTGCTTGA 939 50.37 MNVSRTCSLCGNNGHNSRTCPEADGTTGFMLFGVRLTTTSDGSNSFRKSFSMNNLSQYADHPPSQDSNHADAGYASDDVVHPSDRSGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSKEDDLIFSGHEATQPPLPPSTPQKDNTPGNFSVKIHQAKPPPAAVASGVVDSKAVESTLTLNSSNYPAKPCNSKIIRPIPMLPLSPYPKFAELNINERIPEDPLPLTLKLSTSQSEGQSPAAASQSSGSFQTMSGGGDSIDIVSVA* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26033082 26035627 + CsaV3_5G032040.1 Csa05g02385 530772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02385 312 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 44 312 - -
Csa05g02385 312 MobiDBLite consensus disorder prediction 273 304 - -
Csa05g02385 312 CDD SANT 94 138 IPR001005 -
Csa05g02385 312 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Csa05g02385 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Csa05g02385 312 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Csa05g02385 312 MobiDBLite consensus disorder prediction 272 312 - -
Csa05g02385 312 ProSiteProfiles Myb-like domain profile. 94 139 IPR001005 -
Csa05g02385 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Csa05g02385 312 PANTHER KIN2 44 312 - -
Csa05g02385 312 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Csa05g02385 312 MobiDBLite consensus disorder prediction 55 93 - -
Csa05g02385 312 SMART sant 91 141 IPR001005 -
Csa05g02385 312 Gene3D - 93 145 - -
Csa05g02385 312 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02385 - - - csv:101207806 604.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02385 Csa-Chr5:26033082 Csa01g00367 Csa-Chr1:2295714 9.81E-35 dispersed
Csa01g02912 Csa-Chr1:25546505 Csa05g02385 Csa-Chr5:26033082 4.71E-35 transposed
Csa02g01841 Csa-Chr2:17600161 Csa05g02385 Csa-Chr5:26033082 2.47E-38 transposed
Csa03g00256 Csa-Chr3:2053692 Csa05g02385 Csa-Chr5:26033082 8.64E-43 transposed
Csa04g00428 Csa-Chr4:2690543 Csa05g02385 Csa-Chr5:26033082 5.28E-38 transposed
Csa07g02442 Csa-Chr7:22317717 Csa05g02385 Csa-Chr5:26033082 2.92E-47 transposed
Csa01g00191 Csa-Chr1:1252282 Csa05g02385 Csa-Chr5:26033082 5.55E-41 wgd
Csa01g00811 Csa-Chr1:5119221 Csa05g02385 Csa-Chr5:26033082 9.67E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31818 PF00249 Myb_DNA-binding 1.80E-10 CL0123 Csa TF