Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02392 ATGGATAGTTTTCACCTGCAATGGGTTGCTGTTTTGATCTCCATTATCACCCTTTCCGAAGCTTGCCACCCTGGAGATTGGAAAGGCCTAACCAGTTTCAAGTCTGGAATTTCCCTTGACACTTCTGGTAGGCTGGATAAATGGGTGGGACAAAACTGTTGTGAATGGGAAGGAGTTTATTGTCACAACATTACAGGTAGAGTCAAAGAAATCAATTTGCCTGGCTTCATATCCACTGGCGATGTCCCCTTTCAATCTGAGATGAGAGGTTTTATTTCACCTTCAATAACACTGCTTGATGCTGTTGAGATTATTGATCTTGGAGGACTGCTTGGCCTCGGTGGAAAAATCCCTTCGTCTATTGGTTTGCGTCTTCACAACCTGCGGAAGCTCTATCTTTATGGCAACAAGCTGAGAGGTCCACTTCCAGAAAGTGTAGGTAAGCTTCTGAAGCTTGAAGAACTTGCCGTGCATGATAATAGGCTATCTGGTTCACTCCCAGCAGGTTTGGGTAGTCTCAAGACTCTCAATAGGCTTCTTCTATATGGGAATCGGTTTTCGGGTGCAATACCGAATTCGTTTGCAGATCTTACTAACTTAGTTGAGATGGATTTACACAGCAACTCATTGGTCGGTCAAATACCTGATAGAATTGGTCAGTTGCAGATGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAAAATTCCCCTTTCCTTGAACAATTTGCCAGGTCTTTCGGTTTTGTATTTGGATAATAACAAACTTGAGGGACCAATTCCATTTGCATCCGTTTCTGGTCAAATCCCTTCTTCTCTTGCTTTTCTTAGATTGAATGACAACCGTTTAAGTGGTCCTATTCCTCAAAGTTTTGGAGAACTTGTCAGTCTCCAAAGAGCTTCTCTTTCAAACAACAAACTTGAGGGAACAATTCCTTCTTCTTTAGGGAGCTTATCATCTTTATCAGAGTTGTATCTCGACCGCAACAGATTCTCCGGCAAAATACCAAAATCACTTGGACGCCTGTCTCAGCTCATTCTCCTGAATCTCTCTCACAACTTCATTAAAGGGCCATTACCTGAGATGTCATCTCTTAAAAATATTCAAACCATTGATCTTTCTTATAACCTTCTGAACCTATCCTCCATTCCCCAATGGCTTTTAAAACTGCCATCTCTTTCAAAAATCTATCTTGCTGGGTGTGGTATCCATGGCCAAATTCCGGAGTTCTTGAGAACAACTCCAAGTCCAATACAAGAACTAGATCTTTCCCACAACCATCTAACTGAGAAAATTCCAGAATGGATTGGACGCCTCACTCAGCTCTATTCCCTAAAACTATCAGAAAACTCACTGACCTCCCAGATCCCCAACTCCATTACAAATTTACAGGACTTGGGTGTGCTCGATCTTCATTCAAACAAGTTAACAGGCAACATACAGCAGATCTTCAATATAAGCCACAGATTTCCAGTCGGTTCTTTGACATACATTGATCTTTCAGACAATAGGTTCTCTGGGGACTTCTATCAAACAGACATCGGGCAACAATCTGGGATCCAGTTTCTGAATTTGTCGAACAACAATCTGAAAGGAAGATTACCCACTTCAATCGGAGCATTAAAATCAATACAAACCCTGGACTTGAGCCATAACAATTTGGGTTTCGACTTGCCAGAGACCATAGTGAATGCAAAGCAATTAGAGACGCTGAAGCTGCAAAGAAACCATTTTACAGGAAGAATACCAAAAGGGTTTCTGAATTTGCGTAAGTTAAAGGAATTGGATCTGTCGAATAACTTGTTAGTGGGAGAAATTCCAGCAGGAAAGCCGCTGAGTGATTTTCCACGAAGCGCTTATATGGGTAACAAAGGTTTGTGCGGAAAGCCTTTAAACCCATGTAAGCTTTGA 1917 41.73 MDSFHLQWVAVLISIITLSEACHPGDWKGLTSFKSGISLDTSGRLDKWVGQNCCEWEGVYCHNITGRVKEINLPGFISTGDVPFQSEMRGFISPSITLLDAVEIIDLGGLLGLGGKIPSSIGLRLHNLRKLYLYGNKLRGPLPESVGKLLKLEELAVHDNRLSGSLPAGLGSLKTLNRLLLYGNRFSGAIPNSFADLTNLVEMDLHSNSLVGQIPDRIGQLQMLKELDLSNNFLSGKIPLSLNNLPGLSVLYLDNNKLEGPIPFASVSGQIPSSLAFLRLNDNRLSGPIPQSFGELVSLQRASLSNNKLEGTIPSSLGSLSSLSELYLDRNRFSGKIPKSLGRLSQLILLNLSHNFIKGPLPEMSSLKNIQTIDLSYNLLNLSSIPQWLLKLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSHNHLTEKIPEWIGRLTQLYSLKLSENSLTSQIPNSITNLQDLGVLDLHSNKLTGNIQQIFNISHRFPVGSLTYIDLSDNRFSGDFYQTDIGQQSGIQFLNLSNNNLKGRLPTSIGALKSIQTLDLSHNNLGFDLPETIVNAKQLETLKLQRNHFTGRIPKGFLNLRKLKELDLSNNLLVGEIPAGKPLSDFPRSAYMGNKGLCGKPLNPCKL* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26079359 26081275 - CsaV3_5G032110.1 Csa05g02392 530779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02392 638 SMART LRR_sd22_2 367 384 - -
Csa05g02392 638 SMART LRR_sd22_2 465 490 - -
Csa05g02392 638 SMART LRR_sd22_2 591 616 - -
Csa05g02392 638 SMART LRR_sd22_2 125 157 - -
Csa05g02392 638 SMART LRR_sd22_2 543 560 - -
Csa05g02392 638 SMART LRR_sd22_2 221 247 - -
Csa05g02392 638 PRINTS Leucine-rich repeat signature 224 237 - -
Csa05g02392 638 PRINTS Leucine-rich repeat signature 543 556 - -
Csa05g02392 638 SUPERFAMILY L domain-like 272 606 - -
Csa05g02392 638 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
Csa05g02392 638 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Csa05g02392 638 Pfam Leucine rich repeat N-terminal domain 27 61 IPR013210 -
Csa05g02392 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 7 637 - -
Csa05g02392 638 Pfam Leucine Rich Repeat 593 609 IPR001611 GO:0005515
Csa05g02392 638 Gene3D Ribonuclease Inhibitor 21 88 IPR032675 -
Csa05g02392 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 637 - -
Csa05g02392 638 Pfam Leucine Rich repeats (2 copies) 223 258 IPR025875 -
Csa05g02392 638 SUPERFAMILY L domain-like 51 380 - -
Csa05g02392 638 Gene3D Ribonuclease Inhibitor 89 366 IPR032675 -
Csa05g02392 638 Gene3D Ribonuclease Inhibitor 367 638 IPR032675 -
Csa05g02392 638 SMART LRR_typ_2 149 173 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 441 465 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 245 269 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 125 148 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 320 344 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 367 392 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 543 567 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 591 613 IPR003591 -
Csa05g02392 638 SMART LRR_typ_2 197 221 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02392 - - - csv:101207954 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01400 Csa-Chr4:14033000 Csa05g02392 Csa-Chr5:26079359 1.38E-25 dispersed
Csa05g02092 Csa-Chr5:24198831 Csa05g02392 Csa-Chr5:26079359 1.94E-94 dispersed
Csa05g02392 Csa-Chr5:26079359 Csa07g01394 Csa-Chr7:14158985 2.42E-78 dispersed
Csa05g02392 Csa-Chr5:26079359 Csa06g03298 Csa-Chr6:27643194 8.31E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23