Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02400 ATGATGGGTGTGGACTACTATAATGTGTTGATGGTGAACAGAAATGCAAATGAAGATGACTTGAAGAGGTCGTACAAGAGATTGGCTATGAAATGGCATCCTGATAAGAATCCTTACAACAAGAAAGAGGCGGAGGCTAAGTTCAAGCAGATCTCTGAGGCTTATGATGTGTTAAGCGACGCTAAGAAGCGTCAGATCTACGATCTCTACGGGGAGGAGGCTCTGAAGTCTGCTGATTTTGTTCCTCCGCCTAATTCTAATCCTTCTTTTTCTTATATACCTCGTGACGCCGACGATATTTTTGCCGAGTTTTTCGGCGGAGCTGGGAGTGGTAAGAGCCGAGGGTTTAGAGGAGAGGGTTTGTTTAAGAATGGGAAGGCGGAGGCTGTGAAACAAACGAATAGGAAAGCACCGGCAATTGAGAGCAAGTTACTTTGTAGTTTGGAGGAGCTCTACAAAGGTTCAAGAAGGAAGATGAGGATTTCCCGCACTGTTCCTGATGAATTTGGGAAACCAAAAACTGTTGATGAGGTTTTGAAAATAGATATTAAGCCTGGTTGGAAGAAGGGGACAAAAATCACTTTCCCTGAGAAAGGCAATCAAGAACCTGGTGTTGCTCCTGCTGATCTTATATTTATCATTGATGAGAAGCCCCATCCTGTTTTTGAGAGAGATGGTAATGATTTGGTAGTCAATCAGAAAATATCTCTATTAGAAGCACTCACTGGAAAGACATTGAACATTACAACTTTGGATGGAAGAGATCTCCCTACTGTGACTGATATTGTCAAACCGGGTTACGAAGTAGTGATCCAAAATGAAGGAATGCCCATCTCAAAAGAACCAAACAAGAAGGGGAACCTTAGAATCAAGTTTGATATCATTTTCCCATCAAAGCTTACTTTTGAACAGAAATCTGATCTAAGAAGAGCTTTAGGTGGTTCTGATTAA 951 41.75 MMGVDYYNVLMVNRNANEDDLKRSYKRLAMKWHPDKNPYNKKEAEAKFKQISEAYDVLSDAKKRQIYDLYGEEALKSADFVPPPNSNPSFSYIPRDADDIFAEFFGGAGSGKSRGFRGEGLFKNGKAEAVKQTNRKAPAIESKLLCSLEELYKGSRRKMRISRTVPDEFGKPKTVDEVLKIDIKPGWKKGTKITFPEKGNQEPGVAPADLIFIIDEKPHPVFERDGNDLVVNQKISLLEALTGKTLNITTLDGRDLPTVTDIVKPGYEVVIQNEGMPISKEPNKKGNLRIKFDIIFPSKLTFEQKSDLRRALGGSD* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26118090 26121530 + CsaV3_5G032190.1 Csa05g02400 530787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02400 316 Coils Coil 41 61 - -
Csa05g02400 316 PRINTS DnaJ domain signature 7 25 IPR001623 -
Csa05g02400 316 PRINTS DnaJ domain signature 25 40 IPR001623 -
Csa05g02400 316 PRINTS DnaJ domain signature 43 63 IPR001623 -
Csa05g02400 316 PRINTS DnaJ domain signature 63 82 IPR001623 -
Csa05g02400 316 Pfam DnaJ domain 5 68 IPR001623 -
Csa05g02400 316 SUPERFAMILY HSP40/DnaJ peptide-binding domain 221 306 IPR008971 GO:0006457|GO:0051082
Csa05g02400 316 SUPERFAMILY Chaperone J-domain 4 113 IPR036869 -
Csa05g02400 316 SMART dnaj_3 4 63 IPR001623 -
Csa05g02400 316 CDD DnaJ_C 140 300 - -
Csa05g02400 316 Pfam DnaJ C terminal domain 140 297 IPR002939 -
Csa05g02400 316 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 314 - -
Csa05g02400 316 Gene3D DnaJ domain 4 116 IPR036869 -
Csa05g02400 316 Gene3D - 138 217 - -
Csa05g02400 316 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 2 314 - -
Csa05g02400 316 SUPERFAMILY HSP40/DnaJ peptide-binding domain 140 220 IPR008971 GO:0006457|GO:0051082
Csa05g02400 316 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Csa05g02400 316 ProSiteProfiles dnaJ domain profile. 5 71 IPR001623 -
Csa05g02400 316 CDD DnaJ 5 60 IPR001623 -
Csa05g02400 316 Gene3D - 219 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02400 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101205643 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02400 Csa-Chr5:26118090 Csa07g00311 Csa-Chr7:2321517 1.33E-132 dispersed
Csa01g00799 Csa-Chr1:5055503 Csa05g02400 Csa-Chr5:26118090 9.13E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g837 . . . . . . . . Cmo04g01698 Cmo18g01210 . Cma18g01189 . Car18g01097 Sed06g1576 Cpe09g00141 Cpe01g01433 Bhi07g01633 Tan04g1134 Cmetu10g0412 Lac13g0266 Hepe10g1703 . . Cla05g02486 Cam05g2670 Cec05g2704 Cco05g2739 Clacu05g2672 Cmu05g2526 Cre05g2641 Cone13ag0986 Cone19ag0978 . . . Csa05g02400 Chy10g00962 Cme10g00464 . . . . . . . . . . . Cma04g01621 . Car04g01662 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009703 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 33