Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02401 ATGGGAGCAAGCTTTACGGTCCCACGTTCAAAATCTTCTAATGCAATGATACAACAAAAGCCTCCAACCATTATAGAGTGTCACGACAAAGCTCAATGGACAGCTCGTTTTGAAGCTACAAAGGAAACAAACAAGCTTATGGTGATTGACTTCACTGCTGCATGGTGTGGACCTTGTCGACACATGGAGCCGACTATCAAGGAATTAGCTGCAAGGTTCAAGGACGTTGAGTTCGTTAAAATCGATGTCGATGAATTAATGGATGTTGCAAAGGAATATGGAGTGGAGGCAATGCCAACATTCATACTGATTAAGAACGGTAAAGTAATCGATAAGGTGGTCGGAGCCAGGAGGGATGACCTGCAGAAGAAGATTGAGAAACATAGTAAATATTGA 396 42.42 MGASFTVPRSKSSNAMIQQKPPTIIECHDKAQWTARFEATKETNKLMVIDFTAAWCGPCRHMEPTIKELAARFKDVEFVKIDVDELMDVAKEYGVEAMPTFILIKNGKVIDKVVGARRDDLQKKIEKHSKY* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26120765 26121559 - CsaV3_5G032200.1 Csa05g02401 530788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02401 131 Pfam Thioredoxin 37 127 IPR013766 -
Csa05g02401 131 PRINTS Thioredoxin family signature 47 55 - -
Csa05g02401 131 PRINTS Thioredoxin family signature 55 64 - -
Csa05g02401 131 PRINTS Thioredoxin family signature 94 105 - -
Csa05g02401 131 CDD TRX_family 37 126 - -
Csa05g02401 131 ProSitePatterns Thioredoxin family active site. 48 66 IPR017937 -
Csa05g02401 131 PANTHER THIOREDOXIN 17 129 - -
Csa05g02401 131 Gene3D Glutaredoxin 6 130 - -
Csa05g02401 131 ProSiteProfiles Thioredoxin domain profile. 1 130 IPR013766 -
Csa05g02401 131 PANTHER THIOREDOXIN H7 17 129 - -
Csa05g02401 131 SUPERFAMILY Thioredoxin-like 16 129 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02401 K03671 trxA; thioredoxin 1 - csv:101205407 268.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g03868 Csa05g02401 CCT
Csa03g03868 Csa05g02401 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02401 Csa-Chr5:26120765 Csa06g03291 Csa-Chr6:27598696 1.29E-36 dispersed
Csa01g03300 Csa-Chr1:29381943 Csa05g02401 Csa-Chr5:26120765 1.24E-16 transposed
Csa03g00627 Csa-Chr3:5439851 Csa05g02401 Csa-Chr5:26120765 1.63E-16 transposed
Csa05g02790 Csa-Chr5:28527737 Csa05g02401 Csa-Chr5:26120765 2.89E-06 transposed
Csa06g01918 Csa-Chr6:17307056 Csa05g02401 Csa-Chr5:26120765 2.12E-17 transposed
Csa06g02886 Csa-Chr6:25085031 Csa05g02401 Csa-Chr5:26120765 2.66E-08 transposed
Csa06g03623 Csa-Chr6:29212049 Csa05g02401 Csa-Chr5:26120765 4.63E-14 transposed
Csa07g00755 Csa-Chr7:5301781 Csa05g02401 Csa-Chr5:26120765 1.51E-12 transposed
Csa03g03868 Csa-Chr3:34033858 Csa05g02401 Csa-Chr5:26120765 1.92E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g838 . . . . . . . . Cmo04g01700 Cmo18g01209 . Cma18g01188 . Car18g01095 Sed08g1715 Cpe09g00142 Cpe01g01434 Bhi07g01632 Tan04g1133 Cmetu02g1744 Lac13g0267 Hepe10g1704 . . Cla05g02485 Cam05g2669 Cec05g2703 Cco05g2738 Clacu05g2671 Cmu05g2525 Cre05g2640 . Cone19ag0977 Cone8ag0624 . Lsi04g00482 Csa05g02401 Chy10g00963 Cme10g00463 . . . . . . . . . . . Cma04g01622 . Car04g01663 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1471 Blo10g00481 . . . . . . Bma13g00507 Cmo14g00618 Cmo11g01066 . Cma14g00607 Car11g00877 Car14g00550 . Cpe03g00528 . . . . . . . . Cla10g01413 Cam10g1198 Cec10g1495 Cco10g1469 Clacu10g1474 Cmu10g2239 Cre10g1620 . . Cone2ag0173 Cone16ag0876 . Csa05g02401 Chy04g01515 Cme04g01957 . . . . Bpe09g00474 . . . . . . . . . . Cpe04g00076 . Bhi11g03026 . . . Hepe02g1934 . . . . . . . . . . Csa03g03868 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011447 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31