Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02408 ATGAATGATCCCCAACTAATGGAAGACGACGTAGAGCAAGAGCTATGGAGTTGGGGGGCAGGAACCGACGCCCAGCTCGGCACCGGCCGGCTCGAGGACAACAATCTCCCTCAACTCGTTCGAACTCCGTCACTCTCCTCCGCCCCCGCCATCTCATTCCTCTCCTGCGGTGGCGCTCATGTCATCGCTTTGACTGCCGGTGGCGGGGTACTTACTTGGGGAAGAGGCAATTCAGGGCAGTTGGGGCTAGGAGACATGATAAGCAGCTTACACCCTAAGCCAGTGATGAGGCTGGGGAGCTACTTCATAACCCATGTTTCTGCTGGATGGAGCCATTCTGGTTTTGTTTCAGATGAGGGAAAGCTTTATACTTGTGGGGATGGCTCATTTGGGCAGTTAGGGCATGGTGATTACCAGTTACGTTGCTTCCCTGAGGAGGTCCTGTTTTTCTCCGATAAACATGTTGATAAGATTGCGTGTGGGATGCGCCACTCGCTTGCATTGGTGAAAGGCTCTTCTGGTGAGCAAGTTTACGGATTTGGAGCTGGGAAACGGGGTCAATTGGGTATCTCCAAGAAGATTCAGACTGTTAATCTCCCCATACTTTCTTCCAATTTGGAAGCTGCTGAAATAGTTGGCATAGCTGCTGGCGGAGATCATAGTGCTGCTTTATCCGCTGAAGGGCATCTCTACACTTGGGGAAGGGGATTCAAGAGCACTTCAGATGTATATTCTCCTCAACATCTACCTTCGCCTTCATCGTTCAGTAAAGTTGCTCTTGGATGGAATCATGCACTAGTGTTAACTGATGAAGGGGAACTTTATATGCTTGGCGGCAAACATCACGGAGCGCTGAGTGATTCTGAAATGCTAAATTCGATGAAGTCTCTGCCTGGCGATTCCAGGGAAGACAATTTCCAAGCAGTCCCTGCTCTTAGTGGAATAAAAGTTTTGGACATTGCAGCTGGGGCCGAGCATTCTGTAATCGTTACAGAGGATGGAGGTGTAAAGACTTGGGGTTGGGGGGAGCACGGTCAGCTTGGTTTGGGAGATACATGTGACCACACCAATCCACAAACGGTGAATCTAAACCTCAAACTTGAGAGTACTGCTTATGACGTCAAAGTCTATTGTGGCAGTGGCTTTACAGTTGCCGTTGCAACATCCAATCTCCCTAATTGA 1182 49.58 MNDPQLMEDDVEQELWSWGAGTDAQLGTGRLEDNNLPQLVRTPSLSSAPAISFLSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMISSLHPKPVMRLGSYFITHVSAGWSHSGFVSDEGKLYTCGDGSFGQLGHGDYQLRCFPEEVLFFSDKHVDKIACGMRHSLALVKGSSGEQVYGFGAGKRGQLGISKKIQTVNLPILSSNLEAAEIVGIAAGGDHSAALSAEGHLYTWGRGFKSTSDVYSPQHLPSPSSFSKVALGWNHALVLTDEGELYMLGGKHHGALSDSEMLNSMKSLPGDSREDNFQAVPALSGIKVLDIAAGAEHSVIVTEDGGVKTWGWGEHGQLGLGDTCDHTNPQTVNLNLKLESTAYDVKVYCGSGFTVAVATSNLPN* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26160081 26163312 - CsaV3_5G032270.1 Csa05g02408 530795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 389 IPR000408 -
Csa05g02408 393 Gene3D - 10 295 IPR009091 -
Csa05g02408 393 Gene3D - 296 391 IPR009091 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 272 333 IPR000408 -
Csa05g02408 393 Pfam Regulator of chromosome condensation (RCC1) repeat 68 115 IPR000408 -
Csa05g02408 393 Pfam Regulator of chromosome condensation (RCC1) repeat 176 224 IPR000408 -
Csa05g02408 393 Pfam Regulator of chromosome condensation (RCC1) repeat 14 64 IPR000408 -
Csa05g02408 393 Pfam Regulator of chromosome condensation (RCC1) repeat 333 386 IPR000408 -
Csa05g02408 393 Pfam Regulator of chromosome condensation (RCC1) repeat 119 168 IPR000408 -
Csa05g02408 393 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 381 - -
Csa05g02408 393 SUPERFAMILY RCC1/BLIP-II 13 390 IPR009091 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 271 IPR000408 -
Csa05g02408 393 PRINTS Chromosome condensation regulator RCC1 signature 14 30 IPR000408 -
Csa05g02408 393 PRINTS Chromosome condensation regulator RCC1 signature 51 64 IPR000408 -
Csa05g02408 393 PRINTS Chromosome condensation regulator RCC1 signature 70 86 IPR000408 -
Csa05g02408 393 PRINTS Chromosome condensation regulator RCC1 signature 261 279 IPR000408 -
Csa05g02408 393 PRINTS Chromosome condensation regulator RCC1 signature 329 350 IPR000408 -
Csa05g02408 393 PANTHER OS01G0777800 PROTEIN 15 381 - -
Csa05g02408 393 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 214 224 IPR000408 -
Csa05g02408 393 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 158 168 IPR000408 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 120 171 IPR000408 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 68 119 IPR000408 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 175 227 IPR000408 -
Csa05g02408 393 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 13 67 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02408 - - - csv:101206976 801.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02408 Csa-Chr5:26160081 Csa05g03098 Csa-Chr5:30950475 3.43E-18 dispersed
Csa05g02408 Csa-Chr5:26160081 Csa06g01879 Csa-Chr6:16952939 9.32E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34