Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02409 ATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCCCTAAGAGGCGTCGCCCTCCGCCGTCTACGGAGAACGATGATTTGGAAAAGCCCGTGTCAAAACCTGCGCCACCCCTTGCCCTAGTCGTCGTTGACCTTCCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATTTCCCGCATCCGAATCGACCGTGATTGTGTTGGTTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCGCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAAAAGGTTCAGGTACTATGGGCTAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGTGCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAGCCATTGTCAACCCCAGAAGAAGCAACAGTTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGGGAAGTTGTTGCTTATGACGATATTCTCTAA 573 49.91 MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26163538 26165304 - CsaV3_5G032280.1 Csa05g02409 530796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02409 190 SUPERFAMILY RNA-binding domain, RBD 23 129 IPR035979 GO:0003676
Csa05g02409 190 Gene3D - 2 125 IPR012677 -
Csa05g02409 190 CDD RRM_SF 46 114 - -
Csa05g02409 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 96 IPR000504 GO:0003723
Csa05g02409 190 SMART rrm1_1 45 115 IPR000504 GO:0003723
Csa05g02409 190 MobiDBLite consensus disorder prediction 1 39 - -
Csa05g02409 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 119 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02409 - - csv:105435567 377.481