Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02417 ATGGAATTGCCGCTGGGTTTGATTGAACAATCGCTTAACAGTCGTTATTCCCTATGGGTTCGTGAAGCTCTTAATGATTTGTCGGATAATTTTACAATAACTGATCCCTGTATAGCGGGTCACCCAATAGTGTTCGTCAGCCCTGGATTCTTGAAGATGACTGGATATACCAAAGAAGAGGTGATTGGCAAAAATGGGAAAATGTTTCAGGGCCCAGAAACTAGTCGAAGTTCAGTAATGCTAATTCGTGAGGCAGTTCGTGAAGAGAAGGAGATTCAAATTAATTTACTAAATTATCGCAAAGATGGGACACCCTTCTGGGTCTTTTTCCAAATGACCCCTGTTTTCAGCAAGGAAGATGGACAAATCATTCATTTCGTGGGTGTTCAGGTGCCAATTTTGAAGAATTCAAGGAAATCTAGATGTGGGTTCGTAAGAATTCAAGGTGATTCACATGAGAATGAATTTAGAGCTTGCAAAAGTTTTTTAGGGTCCTGTCGCCGGGAGTTAATGTCTGATTCTATCTCGGAACTAGATTGTACTTTGAATAGAGACTCACAACCGGATTCTAATAGTAGAGGAGTAGAGATTGAAGAACCATGTGAAGCATGTGATGATGAGAAGCAAAGAGCTGCAATAGCTATTAGTAACATCTTATTTGTCCTAACTCATCACAGTGAGGTAACTGGCGGATTGGTGTGCGAAAGGAGATGCAGCTTGCCTAGGGTGGGCATTCTTTGTTCATCCTTGAATACATCTCTTAATAGAATTAAACAGAGCTTTGTATTAACGGATCCAAACTTACCAGACATGCCTATAGTCTATGCGAGTGACGAGTTTTTGAAATTAACAGGTTATACTAGATGTGAAGTGCTTGGGCGCAACTGTAGATTCTTAAGTGGAATCGACACGGATTCTTCAACCCTTTTTAAGATAAAGGAAAGTCTTCAGTCTGAACAAGCTTGCACTGTACGGATTTTAAATTACAGGAAAAATAAGAGCTCATTTTGGAATGATCTCCACGTATCACCTGTTCATAATGCTTCTGGCAAGTTAGCATATTTTGTGGGTGTCCAGATGGATGCAGATGATAAAAAGCAGGATGAACATGGGCTCAATCCTAAGACGAAGCAACTTAGCACTGTAGGTGCAGTCAAGGTGGCCGTGAGGAGCTTGTCGATGACTGTGGGTTGTTCACAGGGTTAG 1206 41.13 MELPLGLIEQSLNSRYSLWVREALNDLSDNFTITDPCIAGHPIVFVSPGFLKMTGYTKEEVIGKNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVFFQMTPVFSKEDGQIIHFVGVQVPILKNSRKSRCGFVRIQGDSHENEFRACKSFLGSCRRELMSDSISELDCTLNRDSQPDSNSRGVEIEEPCEACDDEKQRAAIAISNILFVLTHHSEVTGGLVCERRCSLPRVGILCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTDSSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHVSPVHNASGKLAYFVGVQMDADDKKQDEHGLNPKTKQLSTVGAVKVAVRSLSMTVGCSQG* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26200616 26204301 - CsaV3_5G032360.1 Csa05g02417 530804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02417 401 Gene3D PAS domain 19 141 - -
Csa05g02417 401 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Csa05g02417 401 ProSiteProfiles PAS repeat profile. 43 89 IPR000014 -
Csa05g02417 401 SMART pas_2 248 321 IPR000014 -
Csa05g02417 401 SMART pas_2 18 87 IPR000014 -
Csa05g02417 401 PANTHER PROTEIN TWIN LOV 1 8 393 - -
Csa05g02417 401 PANTHER PROTEIN TWIN LOV 1 8 393 - -
Csa05g02417 401 TIGRFAM sensory_box: PAS domain S-box protein 273 369 IPR000014 -
Csa05g02417 401 TIGRFAM sensory_box: PAS domain S-box protein 43 128 IPR000014 -
Csa05g02417 401 CDD PAS 269 361 IPR000014 -
Csa05g02417 401 CDD PAS 43 133 IPR000014 -
Csa05g02417 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 261 361 IPR035965 -
Csa05g02417 401 Gene3D PAS domain 260 397 - -
Csa05g02417 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Csa05g02417 401 Pfam PAS domain 41 131 IPR000014 -
Csa05g02417 401 Pfam PAS domain 260 361 IPR000014 -
Csa05g02417 401 ProSiteProfiles PAC domain profile. 320 374 IPR000700 -
Csa05g02417 401 SMART pac_2 323 365 IPR001610 -
Csa05g02417 401 SMART pac_2 93 136 IPR001610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02417 - - - csv:101203697 809.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02417 Csa-Chr5:26200616 Csa06g00994 Csa-Chr6:8056924 4.43E-23 dispersed
Csa05g02417 Csa-Chr5:26200616 Csa07g00227 Csa-Chr7:1788691 5.30E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g848 . . . . . . . . Cmo04g01708 . . . . . . . Cpe01g01442 Bhi07g01608 . . . . . . . . . . . . . Cone13ag0984 Cone19ag0974 . . Lsi04g00459 Csa05g02417 Chy10g00974 Cme10g00448 . . . . . . . . . . . Cma04g01630 . Car04g01670 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013588 0 4 0 0 0 0 2 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 1 1 25