Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02420 ATGGAGGTAATTGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTTAGGGAATCGAAGGGGAAGAAGAAGCAGAAAAACAACAAGGAACAAGTTGAAACCGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGAGATATCTTCAACAAACACAAGTATGAGTAATGGAGAGAGTAATTCATCAACTTCCAAACTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAGTTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTCGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAACGGAACTGCTCCAGTTAAACCTGGCACGGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTTAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGTAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTAGAGAATCATCTTTTCCGGAGATCTCTACCACTTCCGTGGTCTATTAGGATGAAAATTGCACTTGGTGCTGCTAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGACCAGTGATATACCGTGATTTTAAAACATCCAACATTCTATTAGATGCCGAATACAATGCCAAGCTTTCTGACTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGGGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCAAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCAAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGACCCGAGGCTTGAGGGTCATTTCTCAATAAAAGGTGCTCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGTGTACGATCCAGCCCCATGGCGAGAAATGGCTATCACACAGCGGCTGGACAAGTTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAATAGCCAATGGTTCTCACGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCAAAACCCAATGTCAAGGCCTAA 1467 43.49 MEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPREISSTNTSMSNGESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRVRSSPMARNGYHTAAGQVPKNGQQLRSYSIANGSHASPYHHQQPHPSPKPNVKA* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26216079 26221731 + CsaV3_5G032390.1 Csa05g02420 530807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02420 488 Coils Coil 486 488 - -
Csa05g02420 488 PANTHER OS01G0588500 PROTEIN-RELATED 63 478 - -
Csa05g02420 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Csa05g02420 488 MobiDBLite consensus disorder prediction 1 32 - -
Csa05g02420 488 Gene3D Phosphorylase Kinase; domain 1 90 216 - -
Csa05g02420 488 CDD STKc_IRAK 137 414 - -
Csa05g02420 488 MobiDBLite consensus disorder prediction 69 103 - -
Csa05g02420 488 MobiDBLite consensus disorder prediction 69 108 - -
Csa05g02420 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Csa05g02420 488 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 63 478 - -
Csa05g02420 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02420 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672|GO:0006468
Csa05g02420 488 SMART serkin_6 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02420 488 MobiDBLite consensus disorder prediction 466 488 - -
Csa05g02420 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Csa05g02420 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00212 Csa-Chr2:1468123 Csa05g02420 Csa-Chr5:26216079 2.07E-176 dispersed
Csa03g02987 Csa-Chr3:28476356 Csa05g02420 Csa-Chr5:26216079 1.09E-151 dispersed
Csa04g00698 Csa-Chr4:4725093 Csa05g02420 Csa-Chr5:26216079 1.44E-137 dispersed
Csa04g01692 Csa-Chr4:16349884 Csa05g02420 Csa-Chr5:26216079 5.03E-66 dispersed
Csa05g02420 Csa-Chr5:26216079 Csa06g01482 Csa-Chr6:12563836 1.66E-163 dispersed
Csa02g02188 Csa-Chr2:19675209 Csa05g02420 Csa-Chr5:26216079 1.82E-58 transposed
Csa01g01768 Csa-Chr1:14453580 Csa05g02420 Csa-Chr5:26216079 1.09E-180 transposed
Csa05g02420 Csa-Chr5:26216079 Csa05g02971 Csa-Chr5:30024348 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78274 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02420 - - csv:101203209 933.71