Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02427 ATGAAGACTTTCGGGGTTTCTTTCTCTTTTTGGTTTCCTGCTTTCATTTTTGCTGTTATCTTTCCAGTTTCAACAGGGCAACTTCCTCCAAGCGAAACCAGGATTCTGTTTGAGATTCAAAAACTTCTGGAGTATCCTGTTGCTTTTCAGGGATGGTCAAACTGGACCAACTTCTGCTATTTACCTCCTTCTCCGTCACTCAAAATTGTCTGTTCTGGTAATCACATAACAGAATTAACTGTCATTGGAAACAAAAGCTCTCCTTCCAAAGCTCCAAAATCAGTTTCAGTGAGTTCCATTCCTTCCCCGCAGACTCTTTCAAATAGTTTTTCCATTGATTCCTTCTTCACTGTTCTCACCAAGCTTTCAAACCTGAGACTCTTGTCATTAGTGTCTTTGGGATTGTGGGGTCCTTTCCCTTCCAAAGTTAACAGGTTCTCGTCTTTGGAAGTGCTTAACATAAGCTCAAATTTTATCTATGGAGGCATCCCTACAACAATCTCAAAACTTCAAAGTCTCAAGAGCCTTGTTTTAGCTGACAATTTGCTCAATGGAAGTGTTCCAGATCTTAGAGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAGAATCAACTAGGACAAAAGGTTCCTTCTCTGGGAGAAAATCTTATGATTGTTATACTGAGGAAAAACTTGTTCAGATCTGAAATTCCCTCAAGAATCTTGCAACTCAATAAGCTTCAGTTATTCGATATCTCCTACAATAAGTTTCTTGGGCCAGTCCATGCCTCTCTCTTCTCTCTACCTGCAGTTCAGTATCTCAACCTAGCTTATAACCAATTAAGTGGAGCGCTCTCTATTAATACAACTTGCAATAGAAACCTTAAGTTTGTAGACATTTCACATAACCTTTTGATAGGAAAATTACCATCTTGCATCAGACCAAATTCGTCAAATCGCACTGTAAATATTTCTTGGAACTGCTTGTCAAGTGGAAGCTCGAAGGATCAGCATACTTATTCCTACTGCCATAAGGAGGCAATGGCCGTGAAGCCTCCCGGTGACGTACAGAAACAGAAAATTAGCAGCAAACTGGGTTTCATGCTCGCTGTCATTGGAGGCGCTGTCGGAATTTCAGGTGTTGTTCTGTTATTAGTTTATGCAATCATTCGAAACAGAAGAAGAAGAAGATTTGGAGAGACCAAATATGAGAAATCTACAGCTGATAAACTCTCTGTTCGTGGCTCTCCACTTCCTAACAGACATGTACCCCAAACAAGGCTACCAGCACTTGGGTTGCCGCCATATCGGGTCTTCACATTGGAAGAGATCGAAGACATCACAAAAAACTTCGACCCGTCAAACGTGGCCGCCAAAGAACCCCAAGCAAAGACGTATAAAGGGTGGCTGCCAGATGGTTCAGTGGTTCTGATCAAGTGCTTTAAACTAAAGCAAAAACTTATACCTCAAGCCTTAGCTCGACACATGGAAGAACTGCCAAATATGAGACATCGCCATTTGGTCAGTGTTCTTGGACACTGCACTTTCACTCATCAAGATCAATTAAACCCAGCTACCACTGTCTTCGTTGTTAATGAATACATATCCAACGGCTCATTAAAGGATTGTCTTACAGATTGGAAAAGAAGGGATGCTCTGAAATGGCCACAGAGAATGGGAATAACCATCGGGATTGCTAGGGGAATACAGCATTTACATACTGGAATGGCATCCGGCATCTTTGGAAACGATATCAAGATCGATAGCATTTTGTTGGATGAGACGCTGTCTGCAAAAATAAGCAATTACAACATTCTCATGCCGCTAGAGAATGCAGAGACCGGGTTGAATGTGACAAAAAGAAGCGAGAATCCAGAGAAGGAAGATATCTTTCAATTTGGTGCTATTTTGCTGCAAGTCATCAATGGTAGACCGATTACAGAGACGAGTGAACTGTATGATCTGAAGAGTGAGTTCGAAAGTGGCTTGGCAGAGGTATTGAAATTACGGGGCGTTATCGATGCTTCGATTCAGGGCTCTTTTGCATTTGATTCACTGAAAACCACAATTCAAATAGCCATCAATTGTCTCAGCAAAGATCCAAACAAGCGACCTTCAATTGAAGATGTACTCTGGAATTTGCAATATTCAATGCAAGTTCAAGAAGGATGGACAAGTAGTGGAAACCTCGGAACTTTCATATAG 2187 41.43 MKTFGVSFSFWFPAFIFAVIFPVSTGQLPPSETRILFEIQKLLEYPVAFQGWSNWTNFCYLPPSPSLKIVCSGNHITELTVIGNKSSPSKAPKSVSVSSIPSPQTLSNSFSIDSFFTVLTKLSNLRLLSLVSLGLWGPFPSKVNRFSSLEVLNISSNFIYGGIPTTISKLQSLKSLVLADNLLNGSVPDLRGLAVLEELNLGQNQLGQKVPSLGENLMIVILRKNLFRSEIPSRILQLNKLQLFDISYNKFLGPVHASLFSLPAVQYLNLAYNQLSGALSINTTCNRNLKFVDISHNLLIGKLPSCIRPNSSNRTVNISWNCLSSGSSKDQHTYSYCHKEAMAVKPPGDVQKQKISSKLGFMLAVIGGAVGISGVVLLLVYAIIRNRRRRRFGETKYEKSTADKLSVRGSPLPNRHVPQTRLPALGLPPYRVFTLEEIEDITKNFDPSNVAAKEPQAKTYKGWLPDGSVVLIKCFKLKQKLIPQALARHMEELPNMRHRHLVSVLGHCTFTHQDQLNPATTVFVVNEYISNGSLKDCLTDWKRRDALKWPQRMGITIGIARGIQHLHTGMASGIFGNDIKIDSILLDETLSAKISNYNILMPLENAETGLNVTKRSENPEKEDIFQFGAILLQVINGRPITETSELYDLKSEFESGLAEVLKLRGVIDASIQGSFAFDSLKTTIQIAINCLSKDPNKRPSIEDVLWNLQYSMQVQEGWTSSGNLGTFI* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26252158 26255448 - CsaV3_5G032460.1 Csa05g02427 530814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02427 728 ProSiteProfiles Protein kinase domain profile. 445 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02427 728 PANTHER BNAC05G10630D PROTEIN 12 724 - -
Csa05g02427 728 SUPERFAMILY L domain-like 106 325 - -
Csa05g02427 728 SUPERFAMILY Protein kinase-like (PK-like) 421 708 IPR011009 -
Csa05g02427 728 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Csa05g02427 728 Gene3D Phosphorylase Kinase; domain 1 419 517 - -
Csa05g02427 728 Gene3D Ribonuclease Inhibitor 29 336 IPR032675 -
Csa05g02427 728 PANTHER OS07G0166700 PROTEIN 12 724 IPR045272 GO:0004714|GO:0006468
Csa05g02427 728 Pfam Protein kinase domain 465 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02427 728 Pfam Leucine Rich Repeat 288 307 IPR001611 GO:0005515
Csa05g02427 728 Gene3D Transferase(Phosphotransferase) domain 1 529 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02427 - - - csv:101222534 1389.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02427 Csa-Chr5:26252158 Csa06g00448 Csa-Chr6:3835957 4.65E-128 dispersed
Csa05g02427 Csa-Chr5:26252158 Csa02g00996 Csa-Chr2:9583496 3.66E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78275 PF00069 Pkinase 3.80E-13 CL0016 Csa PK