Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02432 ATGACAAGTAATGGGATGGCTTTTTTTCCAGCAAATTTCATGTTACAACCTTCGCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACTCCTCAAGATTTTCATGGGGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCGGGGACGGAAATGGTTGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAATATGGAGCAAGTTAAAACACTTGAGAAGAATTTTGAATTGGGGAATAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCTAGAGCTCTTGGTTTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTCGATGGAAGACTAAACAACTTGAAAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAATGAAGCTCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACTTGAACAAAGAAACAGAGGGATCATGCAGTAACAGAAGTGAAAACAGCTCTGATAACATAAAATTAGACATATCAAGAACACCAGCCATTGATAGTCCTCATCAACAACATCCAACAAATAGGCCACTTTTTCCCACTTCTTCATCATTAAGGCCTCCAGCATTAGCTCAACTCTTTCAAACCTCATCAAGATCATCAGACCATCCACCAAAACAAATTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGACGATCACTCGGGTTTTTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 897 39.35 MTSNGMAFFPANFMLQPSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGTEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQQHPTNRPLFPTSSSLRPPALAQLFQTSSRSSDHPPKQIDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26297535 26299545 - CsaV3_5G032510.1 Csa05g02432 530819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02432 298 Gene3D - 78 147 - -
Csa05g02432 298 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Csa05g02432 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 298 IPR045224 GO:0003700
Csa05g02432 298 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Csa05g02432 298 MobiDBLite consensus disorder prediction 189 256 - -
Csa05g02432 298 Coils Coil 133 181 - -
Csa05g02432 298 CDD homeodomain 86 142 IPR001356 GO:0003677
Csa05g02432 298 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Csa05g02432 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 298 - -
Csa05g02432 298 MobiDBLite consensus disorder prediction 64 86 - -
Csa05g02432 298 MobiDBLite consensus disorder prediction 17 37 - -
Csa05g02432 298 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Csa05g02432 298 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Csa05g02432 298 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Csa05g02432 298 MobiDBLite consensus disorder prediction 182 278 - -
Csa05g02432 298 SMART HOX_1 84 145 IPR001356 GO:0003677
Csa05g02432 298 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04463 Csa-Chr3:38896045 Csa05g02432 Csa-Chr5:26297535 2.80E-38 dispersed
Csa05g02432 Csa-Chr5:26297535 Csa06g03138 Csa-Chr6:26787699 3.94E-38 dispersed
Csa06g03219 Csa-Chr6:27254198 Csa05g02432 Csa-Chr5:26297535 2.68E-26 dispersed
Csa05g02432 Csa-Chr5:26297535 Csa05g02973 Csa-Chr5:30044255 8.31E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31821 PF00046 Homeodomain 3.00E-15 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02432 K09338 - csv:101221595 583.178