Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02433 ATGAATCCCGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTGTAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATTGAGCTCGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCTTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAAAAATTGTAGATCAAAGAGTTTGTATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTTTGGAGTAGGCCTCCTGGTCACCAGGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTCATTTCCAGTGCTGGTAACGCAGTAACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGACACATTGACAAAAGCTAAAGCCTTCGATGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTTACTGACATGTTAGGTGCGGGTTATGAAGCAGTTAAATCCGTGGATGAGAAGTACCACGTATTGGAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCTGCCGCTGCTGCCGATACTGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCGGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG 735 46.94 MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGLEH* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26303073 26310141 - CsaV3_5G032520.1 Csa05g02433 530820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02433 244 Gene3D - 5 76 IPR012677 -
Csa05g02433 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Csa05g02433 244 SUPERFAMILY RNA-binding domain, RBD 5 80 IPR035979 GO:0003676
Csa05g02433 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 242 - -
Csa05g02433 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 242 - -
Csa05g02433 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Csa05g02433 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Csa05g02433 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02433 - - - csv:101221355 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02772 Csa-Chr2:24116148 Csa05g02433 Csa-Chr5:26303073 9.40E-38 transposed
Csa02g02819 Csa-Chr2:24528187 Csa05g02433 Csa-Chr5:26303073 3.14E-48 transposed
Csa03g00147 Csa-Chr3:1140955 Csa05g02433 Csa-Chr5:26303073 2.49E-47 transposed
Csa04g01117 Csa-Chr4:9455930 Csa05g02433 Csa-Chr5:26303073 6.85E-42 transposed
Csa05g01126 Csa-Chr5:11496294 Csa05g02433 Csa-Chr5:26303073 2.11E-39 transposed
Csa05g02433 Csa-Chr5:26303073 Csa05g02975 Csa-Chr5:30068479 1.81E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1513 . . . . . . . . . . . . . . . . . Bhi06g00413 Tan11g0526 . . Hepe02g3159 . Lcy10g1998 . . . . . . . . . Cone2ag0186 Cone16ag0857 Lsi02g01493 Csa05g02433 . . . . . . . Bpe11g01634 . . . Cmo04g02886 . Cma04g02758 . . . . Cpe01g02385 . . . . . . . Cla09g01791 Cam09g1881 Cec09g1945 Cco09g2037 . . Cre01g0626 . . Chy09g00263 Cme09g00286
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68