Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02440 | ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAAGAAGAAGAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCACCTAAGAAGCCACCTCCCAAAAGAGCCACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCTCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACTATCTCCGCTCCTTCTCATCTTCGGACGAGCTATTTCAGTCCCACCCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTCGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAATTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTCGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCTTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCGATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGGCGGGTGGCGGTGGTGGTGGTGGCGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG | 1104 | 48.01 | MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSNYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGAGGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS* | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26363833 | 26366348 | - | CsaV3_5G032590.1 | Csa05g02440 | 530827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02440 | 367 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
Csa05g02440 | 367 | MobiDBLite | consensus disorder prediction | 345 | 367 | - | - | |
Csa05g02440 | 367 | Pfam | TCP family transcription factor | 72 | 194 | IPR017887 | - | |
Csa05g02440 | 367 | ProSiteProfiles | TCP domain profile. | 73 | 127 | IPR017887 | - | |
Csa05g02440 | 367 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 11 | 354 | IPR005333 | GO:0003700 | |
Csa05g02440 | 367 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Csa05g02440 | 367 | MobiDBLite | consensus disorder prediction | 32 | 67 | - | - | |
Csa05g02440 | 367 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 11 | 354 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02440 | Csa-Chr5:26363833 | Csa06g00596 | Csa-Chr6:5060846 | 6.63E-38 | dispersed | |
Csa05g00601 | Csa-Chr5:3972251 | Csa05g02440 | Csa-Chr5:26363833 | 2.71E-39 | transposed | |
Csa05g01450 | Csa-Chr5:15790556 | Csa05g02440 | Csa-Chr5:26363833 | 9.24E-37 | transposed | |
Csa05g02171 | Csa-Chr5:24700297 | Csa05g02440 | Csa-Chr5:26363833 | 3.39E-47 | transposed | |
Csa01g00533 | Csa-Chr1:3515792 | Csa05g02440 | Csa-Chr5:26363833 | 6.09E-53 | wgd | |
Csa01g00228 | Csa-Chr1:1459334 | Csa05g02440 | Csa-Chr5:26363833 | 7.59E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31823 | PF03634 | TCP | 4.40E-38 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02440 | - | - | csv:101206263 | 644.039 |