Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02440 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAAGAAGAAGAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCACCTAAGAAGCCACCTCCCAAAAGAGCCACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCTCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACTATCTCCGCTCCTTCTCATCTTCGGACGAGCTATTTCAGTCCCACCCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTCGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAATTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTCGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCTTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCGATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGGCGGGTGGCGGTGGTGGTGGTGGCGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1104 48.01 MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSNYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGAGGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26363833 26366348 - CsaV3_5G032590.1 Csa05g02440 530827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02440 367 MobiDBLite consensus disorder prediction 16 31 - -
Csa05g02440 367 MobiDBLite consensus disorder prediction 345 367 - -
Csa05g02440 367 Pfam TCP family transcription factor 72 194 IPR017887 -
Csa05g02440 367 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Csa05g02440 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 354 IPR005333 GO:0003700
Csa05g02440 367 MobiDBLite consensus disorder prediction 1 86 - -
Csa05g02440 367 MobiDBLite consensus disorder prediction 32 67 - -
Csa05g02440 367 PANTHER TRANSCRIPTION FACTOR TCP23 11 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02440 - - - csv:101206263 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02440 Csa-Chr5:26363833 Csa06g00596 Csa-Chr6:5060846 6.63E-38 dispersed
Csa05g00601 Csa-Chr5:3972251 Csa05g02440 Csa-Chr5:26363833 2.71E-39 transposed
Csa05g01450 Csa-Chr5:15790556 Csa05g02440 Csa-Chr5:26363833 9.24E-37 transposed
Csa05g02171 Csa-Chr5:24700297 Csa05g02440 Csa-Chr5:26363833 3.39E-47 transposed
Csa01g00533 Csa-Chr1:3515792 Csa05g02440 Csa-Chr5:26363833 6.09E-53 wgd
Csa01g00228 Csa-Chr1:1459334 Csa05g02440 Csa-Chr5:26363833 7.59E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31823 PF03634 TCP 4.40E-38 No_clan Csa TF