Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02440 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAAGAAGAAGAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCACCTAAGAAGCCACCTCCCAAAAGAGCCACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCTCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACTATCTCCGCTCCTTCTCATCTTCGGACGAGCTATTTCAGTCCCACCCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTCGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAATTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTCGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAATCTTCGTCAGAGAATTATATGGTTCAAACGAGTACCGGTTCGATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCTACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGGCGGGTGGCGGTGGTGGTGGTGGCGGCGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1104 48.01 MIMDGENGIRRPNFPLQLLEKKKEEEEEQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSNYVNVFKQDQGGIDVVETGKKRRSEQSESSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGAGGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26363833 26366348 - CsaV3_5G032590.1 Csa05g02440 530827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02440 367 MobiDBLite consensus disorder prediction 16 31 - -
Csa05g02440 367 MobiDBLite consensus disorder prediction 345 367 - -
Csa05g02440 367 Pfam TCP family transcription factor 72 194 IPR017887 -
Csa05g02440 367 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Csa05g02440 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 354 IPR005333 GO:0003700
Csa05g02440 367 MobiDBLite consensus disorder prediction 1 86 - -
Csa05g02440 367 MobiDBLite consensus disorder prediction 32 67 - -
Csa05g02440 367 PANTHER TRANSCRIPTION FACTOR TCP23 11 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02440 Csa-Chr5:26363833 Csa06g00596 Csa-Chr6:5060846 6.63E-38 dispersed
Csa05g00601 Csa-Chr5:3972251 Csa05g02440 Csa-Chr5:26363833 2.71E-39 transposed
Csa05g01450 Csa-Chr5:15790556 Csa05g02440 Csa-Chr5:26363833 9.24E-37 transposed
Csa05g02171 Csa-Chr5:24700297 Csa05g02440 Csa-Chr5:26363833 3.39E-47 transposed
Csa01g00533 Csa-Chr1:3515792 Csa05g02440 Csa-Chr5:26363833 6.09E-53 wgd
Csa01g00228 Csa-Chr1:1459334 Csa05g02440 Csa-Chr5:26363833 7.59E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31823 PF03634 TCP 4.40E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02440 - - csv:101206263 644.039