Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02453 ATGGAGAGCCAAAACCAGCTTCCATCTACACAATTTTTGGCTAAAGGCACCACCTTCTTAAGAACTTGTATCAATGGAATCAATGCATTATCAGGTGTGGGAATATTATCGATTCCTTTTGCCATTTCTCAAGGAGGTTGGGTTAGCTTGATTCTTCTATTGATGGTAGCAATTATTTGTTGCTACACAGCTTCACTTTTAAAGCATTGCATGGATGCAAATCCATTAATGGTGAGGACTTATACTGATATTGGAGGATTAGCTTTTGGGTACAAAGGAAGAATATTGGTGTCGGTATTTGTTTACTTGGAGTTATATTTGGTGGCAGTTGAGTTCTTGATATTAGAAGGTGACAATCTTGAGAAGCTATTTCCAAGTAGTAGTCCATTATTTGGTTTGAAAATTGGGAGTTTAAAAGTTGATGAAGGGATGATGAATTACAAGAAGATGTATATGATATTGAGTGCTGTTTTGATATTACCAACAACATGGGTGAAGAATTTGGGATCATTGGCTTATGTTTCTTTTGGTGGTGTTTTGGCTTCTATTGTTTTGGTTTTGTGTGTTGGTTGGATCGGTGCAACTGATGGGTTTGGGTTTAACCAAAGATCAGATAACGATCATCATCGAGTTTTGAACTTGCATGGATTGCCTACAACTATAAGTTTGTTTGTGTTTTGTTATTGTGGACATTCTGTGTTTCCTATGCTTTGCAATTCCATGAAGAACAGAACCCAATTTTCCAAGGTTCTAATGGTTTGCTTTGTGGCAAGCACGTTGAGTTATGGTTCGATGGGTATTTTAGGTTACTGCATGTATGGAGATAACATAAAATCACAAGTAACATTAAACCTTCCATTAAACAAAATCAGCACAAAACTAGCAATTTACACAACCCTAATAAATCCGATTACCAAATATGCAGCCATAACAAACCCAATTGCTATTGCCATTGAAGATTCACTATCTCCTAATTTCTTCATTACTAAAAAAATAGCCATTCTCATAAGAACTTTACTTCTCATTACAACCCTTATTCTTGCTTTATTCATTCCATTTTTTGCTTATGTTATGGCTTTTACAGGTTCCTTTTTAAGTGTCACCACTTCCATTCTTATCCCTTGTTTATGCTATCTCAAGATCAACAAATCTGCTCGTGAATTTGGATGGGAATTGATTCTCATTCTAACAATTTTAGTTTTGGGGATTTTTATTGGTGTCTTTGGTACCTGTTCTTCTGTAAATCAAATTGTAAAACGTCTGTCATGA 1269 35.46 MESQNQLPSTQFLAKGTTFLRTCINGINALSGVGILSIPFAISQGGWVSLILLLMVAIICCYTASLLKHCMDANPLMVRTYTDIGGLAFGYKGRILVSVFVYLELYLVAVEFLILEGDNLEKLFPSSSPLFGLKIGSLKVDEGMMNYKKMYMILSAVLILPTTWVKNLGSLAYVSFGGVLASIVLVLCVGWIGATDGFGFNQRSDNDHHRVLNLHGLPTTISLFVFCYCGHSVFPMLCNSMKNRTQFSKVLMVCFVASTLSYGSMGILGYCMYGDNIKSQVTLNLPLNKISTKLAIYTTLINPITKYAAITNPIAIAIEDSLSPNFFITKKIAILIRTLLLITTLILALFIPFFAYVMAFTGSFLSVTTSILIPCLCYLKINKSAREFGWELILILTILVLGIFIGVFGTCSSVNQIVKRLS* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26417828 26419618 + CsaV3_5G032720.1 Csa05g02453 530840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02453 422 Pfam Transmembrane amino acid transporter protein 16 410 IPR013057 -
Csa05g02453 422 PANTHER OS06G0228500 PROTEIN 13 419 - -
Csa05g02453 422 PANTHER OS05G0424000 PROTEIN-RELATED 13 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02453 K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter) - csv:101204828 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02453 Csa-Chr5:26417828 Csa06g02275 Csa-Chr6:20390410 2.04E-105 dispersed
Csa05g00938 Csa-Chr5:7640320 Csa05g02453 Csa-Chr5:26417828 2.51E-150 transposed
Csa03g03839 Csa-Chr3:33770141 Csa05g02453 Csa-Chr5:26417828 1.66E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104