Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02454 ATGGGTTTCTTCTTCACTTCTCGCTTTGTTCTCATCAACATCATTGTCATTTTCCAATGCTTTTCACTCCTCTCTTTTGCTCAAGATTTCGATTTCTTCTACTTTGTTCAAAGTTGGCCTGGCTCTTATTGTGACACAGGAAGAAGTTGCTGCTATCCAAAGACAGGAAAGCCAAGTGGTGACTTCAAAATTCATGGACTTTGGCCTAATTATAACGATGGAACTTACCCTTCTAATTGTGATTCATCCAACCCCTTCGATCGAACCCAGATATCAGATTTGGTGAGCAGTATGGAGAAGAACTGGCCATCACTTGCCTGTCCAAGCAGTGATAACACAAAGTTCTGGTCACACGAGTGGAACAAACATGGAACTTGTTCCGAATCCGTTCTAGACCAACACAGTTATTTTGAGACTACTCTCAACCTTAAACAACAAGCCAACATCCTCCAAGCTCTTCAAACAGCAGGTATAAACCCAGATGGAAGTTACTACAGTTTAGATAAGATTAAGAGTGCAATTGAAGAAGGAATTAAGCTGAGCCCTGGAATCAGTTGCAATGTTGATGAGTCAGGCAACAGTCAATTCAAATTTTTAATTAGAAAAGCATTGTGGGGTAACTTGTCCATTACTGGACGCAAGCGTTATTGGCCGGGAGCATATTGTGATACAAAGAGACAACATTGTTGCTATCCAGAAACAGGAAGGCCTGCTGCAGATTTTGGGATCCATGGTCTTTGGCCTAATTACAAAGATGGATCCTATCCATCCAATTGCGATCCCGATAGCGTTTTTGATCGAACTCAGATCTCAGAAGTGTTAAGCAGCATGGACAAACACTGGCCATCGTTAAGTTGTCCAAGCAGCAATGGGCTAAGGTTTTGGTCACACGAGTGGGAGAAACACGGGACGTGTTCTGAGTCGGAACTCGACCAGAAGGAATATTTCGAAGCGGCTATTAAACTGAAGGAGAAGGCCAATCTCCTTAAGGTTCTTAATAGTGCAGGAATTGAAGCAAATGATGAGATGTATAGTTTAGAGAGTGTGAAAAATGCAATAGAAGAAGGGATTGGATTTACTCCTGGGATTGAATGTAACAGAGATTCAGCTGGGAATGCTCAACTTTACCAAGTTTATTTATGTGTTGATACTTCGGGTTCTGAGTTCATCAAATGCCCAATTCTTCCCAGGACTAAATGTGCTTCCACCATTCAATTCCCTAAGTTTTAA 1230 41.63 MGFFFTSRFVLINIIVIFQCFSLLSFAQDFDFFYFVQSWPGSYCDTGRSCCYPKTGKPSGDFKIHGLWPNYNDGTYPSNCDSSNPFDRTQISDLVSSMEKNWPSLACPSSDNTKFWSHEWNKHGTCSESVLDQHSYFETTLNLKQQANILQALQTAGINPDGSYYSLDKIKSAIEEGIKLSPGISCNVDESGNSQFKFLIRKALWGNLSITGRKRYWPGAYCDTKRQHCCYPETGRPAADFGIHGLWPNYKDGSYPSNCDPDSVFDRTQISEVLSSMDKHWPSLSCPSSNGLRFWSHEWEKHGTCSESELDQKEYFEAAIKLKEKANLLKVLNSAGIEANDEMYSLESVKNAIEEGIGFTPGIECNRDSAGNAQLYQVYLCVDTSGSEFIKCPILPRTKCASTIQFPKF* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26420804 26425248 + CsaV3_5G032730.1 Csa05g02454 530841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02454 409 Pfam Ribonuclease T2 family 216 392 IPR001568 GO:0003723|GO:0033897
Csa05g02454 409 Pfam Ribonuclease T2 family 30 194 IPR001568 GO:0003723|GO:0033897
Csa05g02454 409 ProSitePatterns Ribonuclease T2 family histidine active site 1. 241 248 IPR018188 GO:0003723|GO:0033897
Csa05g02454 409 PANTHER F7A19.32 PROTEIN 11 197 - -
Csa05g02454 409 ProSitePatterns Ribonuclease T2 family histidine active site 2. 115 126 IPR033130 -
Csa05g02454 409 ProSitePatterns Ribonuclease T2 family histidine active site 2. 294 305 IPR033130 -
Csa05g02454 409 Gene3D - 24 203 IPR036430 GO:0003723|GO:0033897
Csa05g02454 409 Gene3D - 214 409 IPR036430 GO:0003723|GO:0033897
Csa05g02454 409 PANTHER F7A19.32 PROTEIN 216 409 - -
Csa05g02454 409 CDD RNase_T2_euk 217 403 IPR033697 -
Csa05g02454 409 SUPERFAMILY Ribonuclease Rh-like 215 408 IPR036430 GO:0003723|GO:0033897
Csa05g02454 409 ProSitePatterns Ribonuclease T2 family histidine active site 1. 62 69 IPR018188 GO:0003723|GO:0033897
Csa05g02454 409 PANTHER RIBONUCLEASE T2 11 197 IPR001568 GO:0003723|GO:0033897
Csa05g02454 409 SUPERFAMILY Ribonuclease Rh-like 24 194 IPR036430 GO:0003723|GO:0033897
Csa05g02454 409 PANTHER RIBONUCLEASE T2 216 409 IPR001568 GO:0003723|GO:0033897
Csa05g02454 409 CDD RNase_T2_euk 30 193 IPR033697 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02454 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] - csv:101204589 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02454 Csa-Chr5:26420804 Csa03g03334 Csa-Chr3:30259821 1.15E-21 dispersed
Csa04g00948 Csa-Chr4:7162679 Csa05g02454 Csa-Chr5:26420804 4.40E-38 transposed
Csa07g01621 Csa-Chr7:16714977 Csa05g02454 Csa-Chr5:26420804 4.94E-22 transposed
Csa03g03832 Csa-Chr3:33742450 Csa05g02454 Csa-Chr5:26420804 6.25E-33 wgd
Csa05g02454 Csa-Chr5:26420804 Csa05g02987 Csa-Chr5:30194953 8.23E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g920 . . . . . Bpe10g00875 . Bma15g00155 Cmo04g01738 . . . . . Sed06g0633 . Cpe01g01467 Bhi07g01564 Tan04g1076 Cmetu04g1025 Lac13g0321 Hepe10g1745 . . . . . . . . . . . . . Lsi04g00423 Csa05g02454 . Cme10g00413 . . . . . . . . . . . Cma04g01660 . Car04g01699 . Cpe13g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002941 1 2 0 1 2 1 2 1 1 1 1 2 3 1 2 3 2 3 3 2 1 2 1 2 2 2 2 3 2 3 54