Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02462 ATGGCTGAAGTTGATATTAGAGATCCAATCATAAAGTTGTTTGGGAAAACCATTTCTTTGCCATTGAACCATCTTGATTTGCCTTCGGATTCCAAGTTTCCTTCTTCAGAAACTACTGAAAAGGAAACTTCATGTGAAGAATTGGGATTAGAGAAACGGGGGAATAGCAGTGGAAACCAAATCACAGATCAAACAACATCAGGAGTAAGTGAGAATCCATTAGAAGAAAGAGAAATCTCATCGCCAAAAGCTTCCAAAAATGAAGAACAAAGTGAAACAAGTAATTCCCCTGACAACAAAACCTCAAAAAAGCCAGACAAAATCCTTCCTTGCCCTCGATGTAACAGCATGGACACCAAATTCTGTTACTTCAACAATTACAATGTCAATCAACCTCGTCACTTTTGCAAGAATTGCCAAAGATATTGGACAGCCGGTGGGACCATGAGAAACGTTCCGGTTGGTGCCGGCCGACGAAAGAACAAAAACTCCTCATCTTCACATTTCCGTCAGTTAATAATTCCCGACGGCGGAAATCACCGCCATCAATTTCTAGATAATAACGGAACCTTTCTCACTTTTGCCTCAGATTCTTCAATTTCCAACTCACAGAGCTGTAATCCAAATGGGTTTCTCGTTAATACAGAAAACGGAGATGATCATTCAAGTAAATCTTCAATTACAGCTTCGAATTCATCAGAGAAAGGAGCTAAAATGGCTTCACAACAATCAATAGCGAAAAACGTTTTCCCTTTTCTGCCTCAATTACAGTCATTTACAGGGCTTTCATTGCCTTATTCTTCAATTCCTCCACCATCGGCGCCGTTCTACCCGCCGGGGATTCCGGTGTCGTATTACCCTTCACAGCCGTACTGGGGCTACCTAGCGCCGCCGTCTTTGACACTAATTAATCCCAACGGTCAAAATTCTTCTACGAATTCCTGTGTGTTGGGGAAACGTTTAAGAGATGGGAAATTGGTTAAGAGTCCATCAAATACAGAATCTGAGATTGGTAAACAGAGGAATTATGAAGAACTCTGTTTGGGGATACCAAGGACAATGAAAGTGGATGATCCAAATGAAGCAGCAAAGAGTTGTATATGGTCAACACTAGGAATTAAGAATGATAAAAAAGCTGGTGGTGGAAGTACAAGTACAACCATCAATGGCGGTAGTCTTTTTGTCTCTTTACAACAATCTACAAAGGGAAAAGAAGAAACCCAGATTGAAAGTTGGTCGCTTTTACAGGCAAATCCAGCAGCCTTTTCTCGGGCTTTGAAATTCCGAGAGATCGTTTAG 1299 41.11 MAEVDIRDPIIKLFGKTISLPLNHLDLPSDSKFPSSETTEKETSCEELGLEKRGNSSGNQITDQTTSGVSENPLEEREISSPKASKNEEQSETSNSPDNKTSKKPDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSSHFRQLIIPDGGNHRHQFLDNNGTFLTFASDSSISNSQSCNPNGFLVNTENGDDHSSKSSITASNSSEKGAKMASQQSIAKNVFPFLPQLQSFTGLSLPYSSIPPPSAPFYPPGIPVSYYPSQPYWGYLAPPSLTLINPNGQNSSTNSCVLGKRLRDGKLVKSPSNTESEIGKQRNYEELCLGIPRTMKVDDPNEAAKSCIWSTLGIKNDKKAGGGSTSTTINGGSLFVSLQQSTKGKEETQIESWSLLQANPAAFSRALKFREIV* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26447482 26449890 + CsaV3_5G032810.1 Csa05g02462 530849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02462 432 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Csa05g02462 432 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Csa05g02462 432 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Csa05g02462 432 MobiDBLite consensus disorder prediction 35 49 - -
Csa05g02462 432 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 430 - -
Csa05g02462 432 PANTHER CYCLIC DOF FACTOR 2 5 430 IPR045174 GO:0003700|GO:0006355
Csa05g02462 432 MobiDBLite consensus disorder prediction 53 74 - -
Csa05g02462 432 MobiDBLite consensus disorder prediction 208 240 - -
Csa05g02462 432 MobiDBLite consensus disorder prediction 23 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02462 - - - csv:105435572 830.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g03750 Csa05g02462 CCT
Csa03g03750 Csa05g02462 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03750 Csa-Chr3:33238936 Csa05g02462 Csa-Chr5:26447482 4.58E-08 dispersed
Csa05g02462 Csa-Chr5:26447482 Csa06g03703 Csa-Chr6:29624602 3.60E-35 dispersed
Csa01g00554 Csa-Chr1:3605166 Csa05g02462 Csa-Chr5:26447482 5.30E-74 wgd
Csa01g00239 Csa-Chr1:1515388 Csa05g02462 Csa-Chr5:26447482 1.41E-80 wgd
Csa03g03825 Csa-Chr3:33707030 Csa05g02462 Csa-Chr5:26447482 1.18E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g924 . . . . . Bpe10g00878 Bma14g01650 Bma15g00151 Cmo04g01744 Cmo18g01164 . Cma18g01146 . Car18g01055 Sed06g1520 Cpe09g00184 Cpe01g01472 Bhi07g01554 Tan04g1071 Cmetu10g1699 Lac13g0326 Hepe10g1750 . . Cla05g02435 Cam05g2620 Cec05g2653 Cco05g2691 Clacu05g2622 Cmu05g2476 Cre05g2589 . . . . Lsi04g00411 Csa05g02462 Chy10g01010 Cme10g00408 Blo06g00909 Blo11g00777 Bda07g01470 . . . . . . . . Cma04g01665 . Car04g01704 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1560 . . . . Bpe02g01453 Bpe14g00173 . . Cmo14g00585 Cmo11g01039 . Cma14g00586 Car11g00855 . . Cpe03g00467 . . . . . . . . Cla10g01453 Cam10g1162 Cec10g1537 Cco10g1513 Clacu10g1511 Cmu10g2275 Cre10g1660 . . . . . Csa05g02462 Chy04g01555 Cme04g01994 Blo17g00365 Blo18g00391 . . . . Bma01g01039 Bma02g00393 . . . . . . . Cpe04g00052 . Bhi11g02870 . . . Hepe05g0758 . . . . . . . . . . Csa03g03750 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007008 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31826 PF02701 zf-Dof 5.30E-32 No_clan Csa TF