Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02468 ATGGCTTCTGTCCTTATCTTTTTGGCTGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGGAGGTGGAGGCTGGACTGGGGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGCCAGTGACCCCAGATGGTGCCTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCGAACAATGCCCTTCCTAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTCGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGGATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGACATTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACTCAGTTTCCATCAGAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAATTGGCAGAGTAACAGCTACCTTAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGATGGCCGAACTGTCATCTCCAACAACGCCGTCCCAGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 747 50.74 MASVLIFLAGFYAIVSSVDAYGGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIRGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26468526 26470358 - CsaV3_5G032870.1 Csa05g02468 530855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02468 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Csa05g02468 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Csa05g02468 248 Gene3D - 156 248 IPR036749 -
Csa05g02468 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Csa05g02468 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Csa05g02468 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Csa05g02468 248 PANTHER EXPANSIN 7 248 - -
Csa05g02468 248 SMART dpbb_1 61 146 IPR007112 -
Csa05g02468 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Csa05g02468 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Csa05g02468 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Csa05g02468 248 Gene3D - 13 152 IPR036908 -
Csa05g02468 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Csa05g02468 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00892 Csa-Chr5:6920508 Csa05g02468 Csa-Chr5:26468526 1.25E-141 dispersed
Csa05g02468 Csa-Chr5:26468526 Csa06g00228 Csa-Chr6:1563531 2.84E-141 dispersed
Csa02g00844 Csa-Chr2:7719916 Csa05g02468 Csa-Chr5:26468526 1.18E-144 transposed
Csa02g01712 Csa-Chr2:16862254 Csa05g02468 Csa-Chr5:26468526 2.07E-121 transposed
Csa01g00561 Csa-Chr1:3628264 Csa05g02468 Csa-Chr5:26468526 6.66E-105 wgd
Csa01g00242 Csa-Chr1:1529037 Csa05g02468 Csa-Chr5:26468526 1.40E-145 wgd
Csa05g02468 Csa-Chr5:26468526 Csa05g02995 Csa-Chr5:30259871 4.71E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02468 - - csv:101217956 516.153