Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02470 ATGAACCTTTACACATCTGCTCCAACTTCAGCCATCTTCCCCAAATTCAATGCTTCTCAACATGTCAGATCTAGATCATCATCATTCTACAAATGCGCTCCTCAGAGCAATCTGGAATCGCCCAAGAGAAGCGATCTAAAGATAGAGCCACCATTCCCACGTTTGCTTTGCCAAAACCATTCTTGCATGTGCGGAAGAAGGCAGTTCATTGAAGCAGCTGCAGCTACATCTCTGCTCCCTCTTTTCCCTTCAATGGCTTCTTCTAATCCATCCTCTGATTACACTGATATGTTGAATAGGGTTCACTCTCCTAAGCCAGAATGGTATGAGGATTTCTATGCTTCGTTTCTGGCTAATTCCATGAAATCGTATGAAGAGGAGATTGCAGATTACAAGTCCCAGATGTTTGCCAATTTGAGTGGGAAGGCTCAGAAAGTGTTGGAGATTGGAATTGGTGCAGGTCCTAACCTTAAGTATTATGCTGGGGATGAAGGTGTGCAGGTTTATGGTGTGGATCCAAATCAAAAAATGGAGAAATATGCTCGAGAAGCAGCACAGAATGCTGGTTTGCCACCTGAGAATTTTGTGTTTAAACAAGCGGTTGGTGAGGCTATACCATTACCTGATGCTTCTGTCGATGCTGTTGTTGGAACACTTGTCTTGTGTTCTGTGACCAATGTTGACATGACTCTAAAGGAGGTGAAGAGGGTTCTAAGACCTGGTGGGCTATACATATTTGTCGAACATGTTGCTGCAAAAGAAGGAACCATGCTTCGATTTATGCAGAATGTGCTTGATCCTCTGCAACAAATTGCTTTTGATGGATGTCACCTTATTCGGACGACAGGATCAAACATAATGGGAGCAGGGTTTTCAAATGTTGATCTAAACATGACTTCAATCTCTAGTTTTGCCTTCATAAATCCTCAAGTTTATGGAATTGCTTATAGATGA 954 42.45 MNLYTSAPTSAIFPKFNASQHVRSRSSSFYKCAPQSNLESPKRSDLKIEPPFPRLLCQNHSCMCGRRQFIEAAAATSLLPLFPSMASSNPSSDYTDMLNRVHSPKPEWYEDFYASFLANSMKSYEEEIADYKSQMFANLSGKAQKVLEIGIGAGPNLKYYAGDEGVQVYGVDPNQKMEKYAREAAQNAGLPPENFVFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLKEVKRVLRPGGLYIFVEHVAAKEGTMLRFMQNVLDPLQQIAFDGCHLIRTTGSNIMGAGFSNVDLNMTSISSFAFINPQVYGIAYR* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26487047 26490018 - CsaV3_5G032890.1 Csa05g02470 530857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02470 317 Coils Coil 114 134 - -
Csa05g02470 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 297 IPR029063 -
Csa05g02470 317 Gene3D Vaccinia Virus protein VP39 107 307 IPR029063 -
Csa05g02470 317 Pfam Methyltransferase domain 147 246 IPR013216 GO:0008168
Csa05g02470 317 PANTHER METHYLTRANSFERASE LIKE 7B 41 316 - -
Csa05g02470 317 CDD AdoMet_MTases 145 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02470 - - - csv:101203371 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02470 Csa-Chr5:26487047 Csa01g00714 Csa-Chr1:4529190 3.74E-06 dispersed
Csa05g02470 Csa-Chr5:26487047 Csa05g02471 Csa-Chr5:26490570 1.19E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34